Salmo salar (Atlantic salmon): 106577627
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Entry
106577627 CDS
T04363
Name
(RefSeq) ATP-binding cassette sub-family A member 1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa02010
ABC transporters
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
106577627
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106577627
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sasa02000
]
106577627
Transporters [BR:
sasa02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
106577627
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
DrrA1-3_C
AAA_23
PatG_C
MukB
Motif
Other DBs
NCBI-GeneID:
106577627
NCBI-ProteinID:
XP_014011379
UniProt:
A0A1S3N7G5
LinkDB
All DBs
Position
ssa18:52927304..53154338
Genome browser
AA seq
2254 aa
AA seq
DB search
MGLLTQLGLLLWKNFTLRKRQKVRLVVELLWPLFLFFILVWVRSTTQPIYQGECHYPNKA
MPSAGVLPWLQGMMCNIDNPCVNHSTPGEAPGQVNNFNNSIIAGMLIELQSLLANRSIIT
KIQTLSDDVDQWVLILQTSNHKKGQPIPLRSILNDNEMFTTYLRENLSMPSMVANSLITS
NIRLNEMIGISRQDDLRITLCNGTALDRYVEFSSASDKEAFQKVSCSLTAQQLRQTGEVF
LQNLDTRKMLTNLPSALDLTPSETFGLVRKTTEDALPVLDEMNKLQNSMLLKAADMLDFR
ADTFGSLNILLCGKTPNSNSTKTTMNFPAFGAMRNDTENNVRSSNSSAFCKVLIDTLEGT
PGLRIVWRTFRPLIQGKILYTPDTPATRLMVKEANSTFNALAMLKELLEAWEDFEPRGRN
YFQNGPQVSALRAFLDNPVFAAALSHGLKGTRWTEELLANFLYNRPPEDRPAGMPPNDWR
DVFNATSQILDLLKKFIGCLDLDKFEAVDSEGHLVARALELLENDTYWAGIVFEELDPAA
SHPPPYVKYKIRLDIDEGESTRKIKERGWSPGARDSVNNLRYIWGGFAYLQDMMDHGIIR
LHTNKSQPLGVFAQQMPYPCYVDDVFLASIGTMLPMYLVLAFMYTVCMIIKGLVLEKELR
LKEVQRAVGVQNGAIWFAWFTENFVLLMVPCAFISVMVKYGKVLQYSDPSVIFVFLLVFC
VATIMECFFISVFFSKANLAAACGGLIYFVLYLPHLLCYAWRDVMGFQVKIAVSLLSCVA
FGYGCENFAKYEEQGIGIQWSNIAQNPEDGDRYSFIVSILMMLVDALIYWLLTWYIENVF
PGQYGVAKPWYFPFTASYWCGTSSAPNADPSQFKDPIEYTDYLEKPPLNMKAGVSIRNLV
KIYKTGKKLAVDGLTVDFFENHITSFLGHNGAGKTTTMSILTGLFAPTSGTALINGYDIR
TDMDTIRKHLGMCPQHNVLFNDLTVEEHIYFYSRLKGRSREEVKTEIDQIIKDVGLPHKR
KEFAKNLSGGMQRKLSVAIAFVGGSNIVILDEPTAGVDPYARRGIWELLLKYKQGRTIIL
STHHMDEADILGDRIAIISHGKMCCYGSSLFLKKYFGSGYYLTLVKAGDEQMTNQCTGVE
QRQVKEETGESLRRTSLVEGIARQNWSNSEPTDVSKVVCRHVPEAVFLESIGQEITYILP
YGGAKDGTFALLFKELDLKMADICVTNYGISDTTLEEIFLKVAEDTGVDAEIPAINAALV
RDKTRSSRESKRQRQSLTKVGNTSDEMPGKSAEDEMKVKFTSRVEDVERVANVNGKGSSV
ITGWELIRRQFLALFIKRFHHARRSRKGLIAQVILPAAFVCLSLIFSVIVPPFAEYPNLE
LQPWMYGLPQTTFYSNDGPPNNTEVARVADSLVNNPGFGTRCMANNPIPNLPCVPNDSKW
FTPTVDPSISNIFINGNWSMANPSPNCQCSTPQKTTMLPDCPPGAGGLPPPQRTQNTTDT
LQDLTGRNMTDFLLKTYKEAGRKRYGGISVGGVNSQVRMTEPEIETVIRDLRSLLNSSQD
NTTDQMLLNTETLLKELGTRDNVKVWFYNQAWHGIVSFLNVANNAILRGNLPPGHDPREY
GISTSSHPLNLTKAQLSYQAMAATSTDVVVSICVIFAMSFIPASFVLFLIQERVSKAKHL
QFVSGVNPTVYWVANFAWDICNYIVPCLIVIVIFLCFQQKAYVSLSNLPALILLLMMYGW
SITPMMYPASFIFNVPSTAYVVLTCINLFIGINGSVATFIMELFADDNISKINGIVKQVL
LIFPHFCLGRGLIDMGKNQAMATLYESFGEDRYQDPLSWDMVGKNLCAMAIQGAVMFTIT
LLIQYKFCYKPRLISGESFSKEDEDVDVARERARIHKGGSEKDLLRICDLSKVYSGKKIP
AVDRVCVGVPAAECFGLLGINGAGKTTTFKMLTGDISISGGEAFLNGYSIRTEMRDVHQN
MGYCPQFDALNDLLTGREHLEFYARLRGVPEKEVPMVAEWGIQKLGLVKYSNKSAGTYSG
GNKRKLSTAMALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEEC
EALCTRMAIMVNGQFKCLGSIQHLKSRFGDGYTVIVRVGGSPPALGPVEEFVHETFPGSV
LKEKHHNTLQYQLPHSEGALANIFSQFTTHQQRLGVEDYSVSQTTLDQVFVNFARYQQEE
DNQALQVYDHKVDVSDEMPMETRISTDSTVPESV
NT seq
6765 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacacaactcggtctgctcctgtggaagaacttcactcttcggaagaga
caaaaggtgcgtctggtggtggagttgttgtggcctctctttctgttcttcatcctggtc
tgggtgagatcaaccacccaacccatttaccagggcgaatgtcattatccaaataaagcc
atgccttccgccggggtgctgccttggcttcaaggcatgatgtgtaacatagacaaccca
tgtgtaaaccattccacgccaggagaagcaccgggacaagtcaacaacttcaacaattcc
ataattgctgggatgttgatcgagttacagtcacttctggcgaacagatccatcataacc
aagatccagacgctttctgatgatgtggaccagtgggttttgattctacagacatctaac
cataaaaaaggtcagcccattcctctgagaagtatcctgaatgacaatgaaatgttcacc
acatatctgagggaaaacctgtccatgccatcgatggtagccaacagtctgattacctca
aatattcgcctgaatgagatgataggcatttcaaggcaagacgatctgaggatcaccctt
tgcaatggaacagctcttgatagatatgtggaattcagcagcgcctctgacaaggaggcc
tttcagaaagtcagctgctccctcacagcacagcagttgagacaaaccggagaagttttc
ctacaaaacctggatacaaggaagatgctcaccaatctaccttcagctttggatttgact
ccgtccgagacctttggattagtgaggaaaactacagaggatgccttacccgtgcttgat
gagatgaacaagttgcagaactcaatgttgttaaaggccgctgatatgctggatttcaga
gcagacacatttggcagtctgaacatcctactttgtggtaaaacaccaaactccaactcc
acaaagaccaccatgaatttccctgcttttggagcgatgaggaatgacacagaaaacaac
gtcaggagcagcaattccagtgccttctgcaaagtactgattgacactcttgagggaact
cctggcctacgtattgtttggaggacatttcggcccctgatccaagggaagatcctctac
acccctgacacacctgcaactagactaatggtgaaagaggcaaatagtactttcaacgca
ttggccatgttgaaagagttgttggaagcttgggaggattttgaaccacgtggtcggaac
tactttcaaaatggcccccaagtcagtgcactgcgggcctttctagataacccggtgttt
gcagccgcactcagccacgggctcaaaggcacaagatggacggaagaactgctcgccaac
ttcctgtacaacaggccccccgaggaccgccctgcgggcatgccgccgaatgactggcgc
gacgtgttcaacgccaccagccaaatcctggacctcctgaagaagttcattgggtgcctg
gacctggataagtttgaggctgttgacagtgagggacatctcgtggctagagccttggag
cttctagaaaacgatacatactgggctggtatagttttcgaagaactcgaccctgccgcc
agccacccccctccttacgtcaagtacaagatccgcttggacatcgatgagggggagagt
acccgtaagattaaagaaaggggatggtctcccggggcccgtgactccgtcaacaacctg
cgctatatatggggaggcttcgcctatctgcaggacatgatggaccacggcattatacgg
ttgcacacgaacaaatcacagccactcggcgtgtttgcccagcaaatgccgtatccctgc
tacgtggacgacgtcttcctcgcgagtatcggaaccatgcttcccatgtacctggtgctg
gccttcatgtacaccgtctgcatgatcatcaagggcctcgtcctggagaaggagctcagg
ctcaaggaggttcagcgggccgttggagttcagaacggtgccatttggttcgcgtggttc
accgagaactttgtcctgctcatggtcccatgcgcattcataagtgtcatggttaagtat
gggaaggtgctgcagtacagcgacccctcagtgatcttcgtcttcctgctggtcttctgc
gtggccaccatcatggagtgtttcttcatcagcgtcttcttctccaaggccaacctggcg
gcggcgtgcggaggcctcatctacttcgtcctctacctgccgcacctcctctgctacgcc
tggagggacgtcatggggttccaggtcaaaatcgctgtgagtttgctgtcgtgcgtggcc
ttcgggtatggctgtgagaactttgccaagtatgaggagcagggcatcggtattcagtgg
agtaacatcgcccaaaatcctgaagacggagaccggtatagcttcatcgtgtccatcctc
atgatgctagtcgacgccctcatctactggctgctcacgtggtacatagagaacgtcttc
ccaggccaatatggagtagcaaagccatggtacttcccattcaccgcctcctattggtgt
gggacttcatcggcgcccaatgctgatcccagtcagttcaaggaccccattgaatacacc
gattatttggaaaagccaccactcaatatgaaggcaggggtctcaatcaggaaccttgta
aagatctataaaactgggaaaaagcttgcagtggatggactaactgtggacttcttcgag
aatcacatcacctctttccttggtcacaatggggcaggaaaaacaaccaccatgtcgatc
ctgacaggactcttcgctccgacgtcggggaccgctctaataaacggttatgatatccgc
acagacatggacaccattagaaagcatctgggaatgtgccctcagcacaatgtcttattc
aacgaccttacagttgaggaacacatctacttctactccagattaaagggacgaagccga
gaggaagtgaaaacagagattgaccaaattatcaaggatgtcgggctgccacacaaacgc
aaggaatttgccaagaacctgtcagggggaatgcagaggaaattgtcggtggcaatcgca
ttcgtgggagggtccaacatcgtcatcctggatgaacccacagcgggggtggacccatac
gcccggagggggatatgggaactactgttgaagtacaaacaaggtcgcacaatcatcctc
tccactcatcacatggatgaggcggacatcttgggagaccgcattgccattatctctcac
ggcaagatgtgttgctatggctcctccctgttcttgaagaaatactttggcagtggctac
tatctcactctggtcaaggccggagacgagcaaatgaccaaccagtgcactggagtcgag
cagcgccaggtgaaagaggagactggtgagtcattgaggagaaccagtctggttgaaggg
atcgcaagacagaactggagtaactctgaacccacagatgtcagtaaggtggtgtgtcga
catgttcccgaggcggtgttcctcgagagcatcggccaggagatcacctacatccttccc
tacggcggggccaaggatggcacctttgccctcctcttcaaagagctggacctcaagatg
gccgacatttgtgtcaccaactatggcatctcagataccacactagaggagattttcctc
aaagtggcagaggacacaggtgttgatgcggaaataccagctatcaatgcagctttggta
agagacaagacaagaagttcaagggaatccaagaggcaacgacaaagcctcaccaaagtc
gggaacacttcagacgaaatgcctgggaaaagtgctgaagacgagatgaaagtgaagttc
actagcagagtggaggatgtggagagagtggccaatgtgaatgggaagggctccagtgtg
atcacgggatgggaactgatccggagacagttcctggccctcttcatcaaacgctttcac
cacgcacgcaggagccgcaaaggcctcattgctcaggtgattctgcctgctgccttcgtc
tgcctgtctctcatcttctccgtcatcgtccccccttttgctgagtaccccaacttggag
ttgcagccttggatgtacggactgccccaaacgacattctacagcaatgatggaccgcca
aataacacagaggttgctcgggtggcggactctttggtgaataatcctgggtttgggact
cgctgcatggccaacaacccgataccaaatctcccatgtgtcccgaatgattctaagtgg
ttcactcccacagtggatccctctatcagcaacatcttcatcaacggaaactggagcatg
gccaacccttcccctaactgccagtgcagcactcctcaaaagaccaccatgttgccagat
tgcccacctggagccggtgggctgcctccccctcagaggacccagaatacaacggacaca
ctgcaggacctgacggggcggaacatgacagacttcctcttaaagacctacaaggaagca
gggagaaaaaggtatggagggatttctgtcggaggagtcaactcccaagtcaggatgact
gaaccggaaatagaaactgtgatcagggatttgaggagcctattaaattcctcccaggat
aacacgaccgatcagatgctcctgaataccgagacgctcctgaaagagctcgggaccagg
gataacgtcaaggtgtggttctacaaccaggcgtggcacggtattgtatcgttcctcaat
gtggccaacaacgccatcctgagaggcaacctgccgccgggtcatgaccccagggagtat
ggaatctccacctccagccaccccctcaacctcaccaaggctcagctttcctaccaggca
atggccgccacctccaccgatgtggtggtgtccatctgtgtcatctttgccatgtccttc
atcccagcaagcttcgtcctcttcctcatccaggagcgtgtcagcaaggccaaacacttg
cagtttgtcagtggcgtcaacccgaccgtctactgggtcgccaacttcgcctgggatatt
tgtaactacatagtcccgtgtctaatagtcatcgtcatcttcctgtgcttccaacaaaaa
gcctacgtgtccctttctaacctaccagctttgattctgctactgatgatgtatgggtgg
tctatcacacccatgatgtacccagcctcgtttatcttcaacgtccccagcacggcctac
gtggtgctgacctgcatcaacctcttcatcggcatcaatgggagcgtggccaccttcatc
atggagttgttcgctgatgataacatctcaaaaatcaatggtattgtgaagcaggtgctg
ctgatttttccgcacttctgtctgggtcgagggctcatcgacatgggcaagaaccaggct
atggccaccttgtacgaaagctttggggaagaccgttaccaggaccccctcagctgggac
atggtggggaagaacctctgtgccatggccatccagggggcagtcatgttcaccatcact
ctccttatccagtataagttctgctacaaacccagactgatttctggagagtcattctcc
aaggaggacgaagatgtggacgtggcacgggaacgtgcacgcatccataaaggtggctct
gagaaagacctgttgagaatctgcgatctttctaaggtgtactcggggaagaagattcct
gctgtggacagggtgtgtgtgggcgttccagccgcagagtgctttggacttctggggatt
aacggggcaggaaaaaccaccaccttcaagatgctgacaggggacatctccatctccgga
ggggaggccttcctaaacggatacagcatacggacagagatgagggacgttcaccagaac
atgggctactgcccgcagtttgacgccctcaacgaccttctcaccggacgagagcacctg
gagttctacgccagactacgaggcgtaccggagaaagaagtccccatggtggcagagtgg
ggcatccagaagctaggcctggtcaaatactcgaacaagtcagccggtacctacagtgga
gggaacaaacgcaagctctccaccgccatggctttgattggctgtcctcctgtggtcttc
ctggatgagccaacgacagggatggaccccaaagccagacgcttcctgtgggactgcatc
ctgagtgtcatcaaagagggacgctcagtcatcctaacatcacacagcatggaggagtgt
gaggccctgtgcacgcgcatggccatcatggtgaatggacagttcaagtgtctgggcagt
atccagcatcttaagagcaggtttggggacggctacactgtgatcgtgagggtgggcggc
tcgcccccggctctgggccccgtggaagagtttgtccacgagaccttccccggtagcgta
ctgaaggagaagcaccacaacacgctgcagtaccagctcccccacagtgagggcgctctg
gccaacatcttcagccagttcaccactcatcagcagaggctgggtgtggaggactactct
gtctcccagaccactctggatcaggtctttgtcaactttgcgaggtaccaacaggaggag
gacaatcaggccctgcaagtttatgaccacaaagtggacgtgtccgacgaaatgccaatg
gaaactcggatctcaaccgactcaactgtaccagagagcgtctga
DBGET
integrated database retrieval system
