Salmo salar (Atlantic salmon): 106577794
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Entry
106577794 CDS
T04363
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106577794
09122 Translation
03013 Nucleocytoplasmic transport
106577794
03015 mRNA surveillance pathway
106577794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106577794
03041 Spliceosome [BR:
sasa03041
]
106577794
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106577794
Spliceosome [BR:
sasa03041
]
Complex C
Other components
EJC/TREX
106577794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Rhabdo_ncap
Motif
Other DBs
NCBI-GeneID:
106577794
NCBI-ProteinID:
XP_014011611
LinkDB
All DBs
Position
ssa18:complement(57068505..57095290)
Genome browser
AA seq
1485 aa
AA seq
DB search
MADEDVTLDGKSLQSLRVADLKAALEHRHLPKSGAKNALIKRLKGALMLENVKKTSTSHI
GLQPNSQIGEEMSQNSFIKQYLAQQQELLRQRLEREAREAAEADAGETGPEEEEEDDDDD
DDDDTEQDNDSASYHPDKHRPIPSQPPLTRAEEEEGGGPMMMGQGMMSQGMGKGMMSRRP
HFGPGSVPQESPDAPGSWMQQRLSLHTGPRHEEPTTPSPPRAVASLSVRVLGDPERQGLP
PSMPPRVQAQDNEGTAPADDDRPAHYVLHLSRSARAAASAGGNRVQEDSDDDEDDSSEED
EDEWGPAAGARRGVGGGGRGGRSPPPRPQQPSPSVPVGRERSRRKLQPPQHIPPQQVVHQ
PPMQLRQPTPPPSPPPELSFPLPDTPKQSPPDMDEEPEGAGAGVAVRSPPGGLQRQDSDS
SSRSSSPEPLAQRRPGPLSLLARKMASEGAFGKRGEGASDGQTGPGGESSGPGDGGSSVP
EAGPEVGVVLFPGAAITHIGGSSAAHSGTVPVPDVPAPVSMFGSGAQFHPLSLVSGAAVP
SITLTAEPQGPSGETAQKRTEKEKKQVEEREMKQVEKEKQEESESCLPPWKHGRDVTSVS
SQFGSGGSEVPAVHQVDSPKKSPFDRDEPLSSPPGSTTCLPDLAPKKPRMFSDTSSGSMA
SPPKPGQQGSVVVTTPGEPPLKQEVLISGAQQDTDNTIEVTSPKKASAEKPGWKTGGDIA
KTETESDSQAEKETPKAAGETRRRGPEEAVEVEPMGPVLPPSYPGKGEEEKKRKEDVRKK
EEERCRQRKKASDRRSSPSSGDSSSSDSDSGSSSSRSSGSTSSRDKKKKSVPGKGRGHER
RRLEKGGEKKQPSREKKQSSLSEPSGPGPMEVEERPDPEDSRAPQPTPEGDPENSEGRME
ESTTPKALATRSISLTTGSKTSPEGPGEAESGTAAGRKRRWGSSTAVTTKKPSISITTDS
LKSLIPDIKPSQDAVMDLHPDDSQLSGDEDTPTTREDQGLDKDLKIRRTVTQVVPGESHE
NGQGEREEEEVENKQERERTHKEKRKNSYSEDTMVSQSSTTHDAKKVTPSDTLVRRSISQ
QKSGVSVTIDDPVRTDKLPSPPRGKVSNIVHVCNLVRPFTLGQLKELLNRTGSVVEEGFW
IDKIKSHCYVTYSSTEEAVATRAALHGVKWPQSNPKVLTVDFCEQNELDFHRGLLTVDPR
EEHRPQPAVGPGGPKVRPGGLPPLMPERDGRADRGAVGGVRDQWAEREREMERRERTRAE
REWDRDKVRDFGGKPGEERERGRRSRSLERERRRKEREGKEKKTDKKDEPPVKLLDDLFN
KTKAAPCIYWLPLTEEQANQRGKEREERQKERERRRKEQQEEEDKKREEERKERMKSREE
GGAAVSTGGGSVRGSEGDRDREGERGRDREGERGRDREGERGRDREGERGRDREGERGRD
REGERGRDGDKRKDIGAFKPKGPDAKPLSGFRRSRSRSNLRDRRR
NT seq
4458 nt
NT seq
+upstream
nt +downstream
nt
atggccgatgaagatgttacgctggatggtaaatcgcttcaatcgctccgtgtggcggat
ttaaaagccgctttggagcaccgacacctccctaaaagcggggcgaaaaatgcgctcatt
aagcgactgaaaggggctctgatgttggaaaatgttaagaagacttccacttcccacatt
gggctccagcccaactcccagattggggaggagatgagccagaacagcttcataaagcag
tacctggctcagcagcaggagctcctccgccagaggctggagagagaggcccgggaggcg
gcagaggccgatgcaggggaaacaggcccggaggaggaggaggaggacgacgatgacgac
gacgacgacgacacagagcaggacaatgacagtgcttcctaccaccctgacaagcatcgc
cccataccctcccagcccccactgacccgggccgaggaagaggaaggaggtggaccaatg
atgatggggcaaggaatgatgtctcagggtatgggcaaagggatgatgtctcgcagacca
cactttggcccaggctccgtgccccaggaatcccctgacgcccctggatcctggatgcag
cagcgtctctcactccacactggcccccgccatgaggagcccaccaccccctcaccgccc
cgcgctgtggcctcgctgtctgtgcgtgtcctgggggaccctgagcgccagggcctgcca
ccctccatgcccccccgcgtccaggcccaggataatgaaggcaccgccccggcggatgac
gaccgacccgcccactatgtgctccacctcagccgctccgctcgggcagcagccagcgcc
gggggtaaccgtgtccaggaagacagcgatgatgatgaagatgacagcagtgaggaggac
gaagatgagtggggacctgcggcaggggcaaggagaggggtcggaggcggaggaagagga
ggacgttcccctccccctcggccccagcagccttcccccagcgtcccagtgggccgagag
agatccagacgcaagctccagcctccgcaacacatcccccctcagcaggtagtacaccag
cccccgatgcagctccgccagcccaccccgcccccctctccacccccagagctctccttt
cccctccccgacacccccaagcagagcccgcccgacatggatgaggagccagaaggagca
ggggctggggtagccgtccgctcccctccaggtggcctccagaggcaggactccgactcc
agctcccgctccagcagcccagagcccctggcccagcggcggcccggacccctctccctg
ctcgcccgcaagatggcttccgagggagcgttcgggaagagaggtgagggtgcctcagac
ggccagacaggtcctggtggggagtcgtccggaccaggagatggcggtagcagcgtccca
gaagcaggaccggaggttggggtagtcctgttccctggggctgctatcacccacatcgga
ggcagcagcgcagcgcactccggaactgtccctgtacctgatgtccctgcaccagtgtct
atgtttggatcaggagcccagttccatcctctctctctggtgtctggagcagctgtcccc
agcatcaccctcaccgcggagccccagggtccatctggagagacggcacagaagaggact
gagaaagaaaagaagcaggtggaggaaagggagatgaagcaagtggagaaggagaaacag
gaagagagtgagagttgcctgccgccatggaagcacggacgtgatgtgacgtctgtgtcc
tcgcagtttgggtctggggggtcagaggtgcctgcggtgcaccaggtggacagcccgaag
aagtcacccttcgacagggacgaacccctctcctcccctcccggctcaaccacctgcctg
cctgatctcgcccccaagaagccccgcatgttctccgacacctcatccggctccatggca
tcccctcccaaacctgggcagcaggggtctgtggtggtgaccaccccaggggaacccccc
ctcaaacaggaagtcctcatctcaggagcccagcaggacacagacaacaccatagaggtc
acttcaccgaaaaaggcgtccgcggaaaagcctggatggaaaactggaggagacattgca
aaaacagagacggagagtgacagccaggcagaaaaggagacaccgaaagccgccggcgag
accaggagaagaggacctgaagaggctgttgaggttgagcccatggggcctgttctgccc
ccctcttacccaggtaagggagaagaagagaagaagcggaaggaagatgtgaggaagaag
gaagaagagcggtgcaggcagaggaagaaggcgagcgacaggaggtcatccccctccagc
ggcgactcttcatcctccgactcggattctggatcctcttcatcacgttcctctggctcc
acctcctcccgggacaaaaaaaagaaatctgtcccaggaaaaggaagagggcatgaaagg
agaagactggaaaaaggaggagagaagaaacaaccttccagggagaagaagcagtcttcc
ctgtcggagccgtccggccctggccctatggaggtggaggagaggccagacccagaggac
tccagggccccccagcccacccccgaaggggacccagagaacagtgagggccgcatggag
gagagcaccactcctaaagctttggccacacgcagcatctctttaaccacaggcagtaag
acgtctccagagggaccaggagaggcagagtctgggaccgccgctgggaggaagaggagg
tggggatccagcacggccgtcaccaccaagaaaccgtccatcagcatcaccaccgactct
ctgaagtctctgatcccagacatcaagcccagtcaggatgctgtaatggatctccaccca
gacgacagccagctgtctggggacgaggacacacccaccaccagggaggaccagggcctg
gacaaagacctgaagatcagacgcaccgtcacacaggtggtcccaggtgaaagccatgag
aatggccagggagaacgagaggaggaagaggtggagaataaacaggagcgtgagaggaca
cacaaagagaagagaaagaacagctactcagaagataccatggtgtctcagtcgtccaca
acacacgatgccaagaaagtcactcccagtgatactctggtgcgtcgctccatcagtcag
cagaagtctggtgtgtctgttaccatcgacgatccggttcgcacagacaaactgccctct
ccgcccagaggcaaagtctccaacatcgtccacgtctgtaacctggtgcgacctttcacc
ctgggccagctgaaggagctgctgaacaggacaggctcggtggtggaggagggcttctgg
atcgacaagatcaaatctcactgctacgtcacttactccagcacagaggaggctgtggcc
acacgagctgctcttcacggggtgaagtggccccagagcaaccctaaggtcctcactgtg
gacttctgtgagcagaacgagctggacttccacagaggtctgctgaccgtggaccccaga
gaggagcaccggccccagcctgccgtgggtcctggaggtcccaaagtccgaccggggggg
ctgccccctctgatgcctgaacgggacgggcgcgcggaccgcggggctgtcggaggggtg
cgggaccagtgggcggagagagagagggagatggaacgccgggagaggaccagggcggaa
cgcgagtgggaccgggacaaggtgcgagacttcggaggcaaaccaggagaggagagggag
agagggaggagatctcgctccctggaaagagagaggaggcgaaaggagagggaagggaag
gagaagaagaccgacaaaaaggatgagcctcctgtcaaactactagacgacctcttcaat
aagaccaaagcagctccctgtatatactggcttcccctcactgaggaacaggcaaaccag
agggggaaggaacgggaagagcgacagaaagaacgcgagaggaggcggaaagaacagcag
gaggaggaggacaagaagcgagaggaggagaggaaggagagaatgaaaagtagagaggag
ggaggagctgcggttagcactggaggtgggagtgtccggggatctgagggagacagggac
agagagggggagcgagggagggacagagagggggagcgagggagggacagagagggggag
cgagggagggacagagagggggagcgagggagggacagagagggggagcgagggagggac
agagagggggagcgagggagggacggggacaagaggaaggacattggtgctttcaaaccc
aaaggtcccgatgctaaacccttgtcggggttccgacgctcccgtagccgtagcaacctc
cgagacagacgccgctga
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integrated database retrieval system
