Salmo salar (Atlantic salmon): 106577876
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Entry
106577876 CDS
T04363
Name
(RefSeq) collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04382
Cornified envelope formation
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04518
Integrin signaling
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106577876
04518 Integrin signaling
106577876
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106577876
09142 Cell motility
04820 Cytoskeleton in muscle cells
106577876
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
106577876
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106577876
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106577876
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106577876
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106577876
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106577876
NCBI-ProteinID:
XP_014011769
UniProt:
A0A1S3N8L2
LinkDB
All DBs
Position
ssa18:59723222..60008599
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AA seq
1693 aa
AA seq
DB search
MTFWICVLAVSWAVEATHGGTSQEPCNGLDCSGGCNCNPEKGGRGRPGALGPVGPGGPEG
FPGDQGPFGQKGEKGHVGRMGPSGLKGDQGPMGVPGFPGNDGVPGHPGQDGGRGLPGFDG
CNGTQGDPGPRALDGGIPGASGLPGPKGPKGQKGEPVYVGTIGGAPGLPGLDGVPGPGGP
DGRPGDIGPSGPEGLLGNPGPPGPPGPVGSPSLGFRGEPGDKGNTGPPGPRGVPGDEPLV
GSSITTIYKGDKGEGGYKGVRGPSGRPGLPGPFGYPGEKGENGILGYPGGRGPPGFNGPP
GSPGRQGFTGSPGFPGQPGYSGPKGDQGEQGPPGPPIYADTQGLAVQGAPGDNGIDGFPG
QPGDAGTPGFPGQPGRPGDSFGDGRGGSPGFPGTPGPKGERGNPGRQSYGPEGLPGGPGL
PGPPGPPGPPGRSVNIQPGRFDNLPGAPGRPGGQGPPGASGYKGPKGELGDCNCLGGGTT
GGVGAPGAPGADGRPGAFGRKGESGDPGIPGFGGQPGTPGRVGERGFFGRKGEKGASFYP
SFSRGIKGEQGAQGLRGPPGNMGRPGRDGLPGSPGQPGPPADVDGYGTIGERGFPGLSGA
KGRAGEPGENGIGYQGTIGPRGFPGDSGFTGLPGQPGLPGPPGDSCGQEGVNGAEGGLTL
PCRLPGEDGNPGFPGIPGRLGPKGEPGFPGGPGRPGFDGGKGERGDPGYGGQPGPQGFPG
PRGDAGGPGIPGEGRPGAPGKNGLPGRPGEKGRPGEVLGSSTGLPGPPGFPGGPGDKGEP
GASGLPGGSGFDGRSGIPGAKGERGTDGYPGTLGLPGLPGDRGNGFPGPAGPSGSKGLPG
SPGCQGYPGLKGARGDAGFPGPTGRKGQPGQPGGDGSSGLRGLPGPPGPGGRNGIPGGPG
RKGESGYPGLAGFPGMPGNPGRPGGPGGKGAPGFSGKDGLPGVFGAPGPKGDEGYRGLPG
PPALPPRVDYLEKGQRGDNGANGLPGFPGPRGDKGFPGQPGRQGLPGLPGYADRAKGEPG
LPGLPGRPAGPGYPGPKGSPGIIGFPGMPGPRGDDGRPGFPGNPGVPGQPGAKGERGDSS
GYPGSPGAKGESGTPGYPGGQGANGAPGDNGFPGGPGFSGQKGAPGVPGRPGLLGTPGFT
GAKGLNGYPGGRGLDGTTGRPGSPGSSGEKGLPGSPGLDGLNGLAGPKGIPGTPGYSEEG
RPGTPGAAGLKGERGSSIPGPPGYNAEKGARGESGGAGMTGFPGLPGRRGETIGSNIPGP
LGDPGLPGLDGEEGYGGPPGPPGPPGPSTAQGDRGDAGLPGFPGTPGRRGDPGGPGGPGR
EGSPGFNGERGDSGYSGVSGTKGYPGDPGYYGGKGPKGRKGSSGRKGAPGITLPPPIFQT
PYGEVGGPGLNGAPGAMGEPGNPGIPGRGGPKGRPGAVGKLGRNGGSGLNGPLGDPGSPG
FPGPSGSQGLPGKPGLQGPPGSVARSRSVGFTLVKHSQNNQVPMCPQGMSRLWEGYSLLY
VEGQEKAHNQDLGMAGSCLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVG
EEAISQYISRCSVCEAMSQAVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQS
LVSPGSCLEDFRATPFIECNGAKGTCHFFANKYSFWLTTVEPSREFNPPPMDTLKGGNQL
SRVSRCQVCSKIL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgacattctggatttgtgtacttgctgtcagctgggcagttgaagcgacacacgggggg
accagccaggagccctgtaatgggctggactgtagcggaggatgtaactgtaacccagag
aaaggtggcagggggcgtccaggggcattggggccagtaggacccggtggaccagagggg
ttcccaggcgaccaagggcctttcgggcaaaaaggagagaagggccacgtcggacgcatg
ggcccctctgggctgaaaggagaccaggggcccatgggcgtcccagggttcccaggaaac
gacggagtcccaggtcacccaggtcaggacggtggcaggggtctaccagggtttgatggc
tgtaacggtacccagggagacccaggtcccagagctctagacggaggaatacctggagct
tcaggactccctgggcctaaaggtcctaaagggcagaagggagaacctgtatatgttgga
accatagggggagctcctggtttgcctggactggacggtgtacctggtcctggaggtcct
gacggaaggcctggtgacatcggccccagtggtcctgaaggattacttggcaatccaggt
ccccccggtccccctggtcctgtagggagccccagcctaggcttccggggggagccagga
gataagggcaacacgggtccacccggacctcgaggcgtgcccggcgacgagccgctagta
ggctcatctattaccactatctacaaaggagataagggggaagggggttacaaaggagta
cgtggaccatctggtagacccggcctacctggtccttttggctatcctggcgagaaggga
gagaatggaattctggggtatccagggggacggggtcctcctggttttaatggacctccc
ggatctcctggaagacagggattcacaggcagtccggggttccccgggcaaccaggttac
agtggacctaagggtgaccagggggaacaggggcctcccggaccccccatctacgcagac
acacaagggctggctgttcaaggagcaccaggtgacaacggtatcgacggcttccccggc
caaccaggtgacgctggcactccagggtttccaggacaaccaggacgaccaggcgactcc
ttcggcgatggtcgaggaggcagcccagggttccctggtaccccagggcctaagggagag
aggggtaaccccggcagacagagttacggccctgagggcctaccaggaggaccaggctta
ccaggaccccctggacctcccggaccaccaggcagatctgtcaacatccagcccggcagg
tttgacaatctaccaggagcgccaggacgaccaggaggccagggaccacctggagccagc
ggatacaaaggacccaaaggggaactgggtgactgtaactgcctgggaggaggcaccacg
ggtggggtgggagcaccgggggctcctggggctgatggaagacctggggccttcggcagg
aagggcgaaagcggagacccaggcatacccggtttcggaggacaaccaggaacacctggc
cgtgtgggcgagaggggtttctttgggcgtaaaggagaaaagggtgcctccttctacccc
tcgttcagccgagggatcaagggtgaacagggggcccagggccttcgagggccccctgga
aacatgggtcgacccgggagagacggacttcctgggtcccccggacagcctgggcctcct
gctgatgttgatggctatggaaccattggagagagaggattcccagggttgtcaggcgcc
aaaggtcgcgccggtgaacctggagagaacgggattggctaccagggtaccatcggcccc
cgtgggtttccaggcgactcgggctttacggggttaccagggcaacctggtttacctggc
cctccaggtgacagctgtgggcaggagggggttaatggcgcagagggagggctaacgcta
ccatgtcgtctacctggtgaggatggaaaccccggcttccccggaatacctggaagacta
ggtcccaagggcgagccaggtttcccaggtggtcccggtcggcccggttttgacggaggg
aagggagagagaggagacccaggttacgggggccagcctgggccacaaggtttccctggc
cccagaggagatgcggggggcccaggtattccaggcgagggtcgtccaggggccccaggg
aagaacgggctcccggggcggccgggggagaagggccggccaggggaggtgctggggtcc
tcaacagggctccctggaccacctgggttcccaggaggaccaggagacaagggagagcca
ggagcatcaggacttcccggaggatcaggttttgatggtcggtcgggcattcccggagct
aagggtgagcgcggtacggatggctaccccggaactctaggtcttcccggacttcctgga
gacagaggcaatggatttcccggtcctgctggaccatccggaagcaaaggattacccgga
tctccaggctgtcaaggctaccccggtttaaaaggagccagaggtgacgcgggcttccca
ggcccaactgggaggaaggggcaaccagggcaaccaggaggggatggatcatcaggactc
aggggccttccgggaccaccgggccccgggggaagaaacggcatccctgggggaccagga
aggaagggcgagagcggttaccctggactggcaggtttccccggaatgccaggtaaccct
ggaagacccggtggaccaggaggtaaaggagctccggggttctcaggaaaagacggcctg
cccggtgtcttcggagcgccaggacctaaaggtgacgaaggttaccgtggtctccctggc
ccacccgctctgccccccagagtagattacctggagaagggacagaggggcgataacggt
gccaacggactacccggtttccctggacctagaggtgacaagggtttcccaggccagcct
ggtcgtcagggtttgcccggactgcctggttatgctgacagggctaaaggagaaccagga
cttcccggtctccccggacgcccagccggtccaggctacccaggccctaaaggatctccc
ggtatcatcggcttccctggcatgcctggaccaaggggtgacgatggcaggcctggtttc
cctggtaaccccggagtccctggtcagccaggtgctaaaggggagagaggtgactcgtcc
ggctaccccggaagtcccggagctaaaggtgagtccggaacccccggttacccaggtggc
caaggtgctaatggcgcccccggcgacaacggtttcccagggggccctgggttcagcgga
cagaagggagcaccgggagttcctggaagacctggactcttgggtacccctggtttcact
ggggctaagggtctgaacggatacccaggaggaagaggtctcgacgggacaactggccgc
cccggctcccctggatcatctggagaaaaaggtctgccgggatctcctggtcttgatgga
ctcaacggactggctggaccgaagggtataccaggaaccccgggttatagtgaggagggt
cgccccggcacccctggagcggccggtctgaagggagagaggggatcctccatcccagga
cccccgggatacaacgcggagaagggagcgagaggagagtcagggggtgctggtatgaca
ggcttcccaggtctgcctggtcgtcgtggggagacaatcggctccaatatccctggacct
ctgggagacccaggcctgcccggactcgatggagaagaaggttacggtggtcctccaggc
cccccaggcccaccggggcccagtacggcccagggagacagaggtgacgctgggctacct
ggcttccccggtacccctgggagacgtggagatcctggaggtcccggtggcccaggaagg
gaaggcagccctggattcaatggagagagaggcgactctgggtacagtggagtgtcagga
accaaaggctaccctggagatccaggatattacggagggaaaggacccaaaggaaggaaa
ggttcttctggtcgtaagggggccccaggtataactttaccccccccgatcttccagact
ccctacggagaagtgggaggccctgggctcaacggcgctccaggggccatgggagaacca
ggcaatcctggcattccaggcagagggggtcctaaaggaaggcccggtgcggtggggaag
ctggggaggaacggagggtcaggtctgaatggacctctgggagaccctggttctcctggt
ttccctggaccttccggatcacaaggtctgcctggtaagcctggtctgcagggtcccccc
ggcagtgtggcccgcagcaggagtgttggtttcaccctggtgaaacacagtcagaacaac
caggtacccatgtgtccccagggcatgtcccggctctgggagggatacagtctgctgtac
gtagaggggcaggagaaggcacacaaccaggacctcggtatggcgggctcctgcctcccc
cgtttcagcactgtccccttcctctactgcacgcccaacgagatctgttactacgccagc
cgcaacgacaagtcctattggctgtccaccactgcgcccatccccatgatgccggtggga
gaggaggccatcagccagtacatcagcaggtgctccgtgtgcgaggccatgtcccaggct
gtggctgtccactcccaggacctcaccatccccacctgccctgctggctggaggtctctc
tggatcgggtactccttcctcatgcacacagctgccggggctgagggcggaggccagtcc
cttgtttcacccgggtcctgtctggaagacttccgtgcaactcccttcatcgagtgtaac
ggggctaagggcacctgccacttctttgccaacaagtacagcttctggctgaccacggtg
gagcctagccgggagttcaacccccctccgatggacacgctgaagggaggcaaccaactg
agcagagtcagtcgctgtcaggtctgcagtaagatcttgtag
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