Salmo salar (Atlantic salmon): 106577876
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Entry
106577876 CDS
T04363
Name
(RefSeq) collagen alpha-6(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04510
Focal adhesion
sasa04512
ECM-receptor interaction
sasa04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
106577876
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
106577876
09142 Cell motility
04820 Cytoskeleton in muscle cells
106577876
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106577876
00536 Glycosaminoglycan binding proteins [BR:
sasa00536
]
106577876
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
106577876
Glycosaminoglycan binding proteins [BR:
sasa00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
106577876
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
106577876
NCBI-ProteinID:
XP_014011769
UniProt:
A0A1S3N8L2
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All DBs
Position
ssa18:59723222..60008599
Genome browser
AA seq
1693 aa
AA seq
DB search
MTFWICVLAVSWAVEATHGGTSQEPCNGLDCSGGCNCNPEKGGRGRPGALGPVGPGGPEG
FPGDQGPFGQKGEKGHVGRMGPSGLKGDQGPMGVPGFPGNDGVPGHPGQDGGRGLPGFDG
CNGTQGDPGPRALDGGIPGASGLPGPKGPKGQKGEPVYVGTIGGAPGLPGLDGVPGPGGP
DGRPGDIGPSGPEGLLGNPGPPGPPGPVGSPSLGFRGEPGDKGNTGPPGPRGVPGDEPLV
GSSITTIYKGDKGEGGYKGVRGPSGRPGLPGPFGYPGEKGENGILGYPGGRGPPGFNGPP
GSPGRQGFTGSPGFPGQPGYSGPKGDQGEQGPPGPPIYADTQGLAVQGAPGDNGIDGFPG
QPGDAGTPGFPGQPGRPGDSFGDGRGGSPGFPGTPGPKGERGNPGRQSYGPEGLPGGPGL
PGPPGPPGPPGRSVNIQPGRFDNLPGAPGRPGGQGPPGASGYKGPKGELGDCNCLGGGTT
GGVGAPGAPGADGRPGAFGRKGESGDPGIPGFGGQPGTPGRVGERGFFGRKGEKGASFYP
SFSRGIKGEQGAQGLRGPPGNMGRPGRDGLPGSPGQPGPPADVDGYGTIGERGFPGLSGA
KGRAGEPGENGIGYQGTIGPRGFPGDSGFTGLPGQPGLPGPPGDSCGQEGVNGAEGGLTL
PCRLPGEDGNPGFPGIPGRLGPKGEPGFPGGPGRPGFDGGKGERGDPGYGGQPGPQGFPG
PRGDAGGPGIPGEGRPGAPGKNGLPGRPGEKGRPGEVLGSSTGLPGPPGFPGGPGDKGEP
GASGLPGGSGFDGRSGIPGAKGERGTDGYPGTLGLPGLPGDRGNGFPGPAGPSGSKGLPG
SPGCQGYPGLKGARGDAGFPGPTGRKGQPGQPGGDGSSGLRGLPGPPGPGGRNGIPGGPG
RKGESGYPGLAGFPGMPGNPGRPGGPGGKGAPGFSGKDGLPGVFGAPGPKGDEGYRGLPG
PPALPPRVDYLEKGQRGDNGANGLPGFPGPRGDKGFPGQPGRQGLPGLPGYADRAKGEPG
LPGLPGRPAGPGYPGPKGSPGIIGFPGMPGPRGDDGRPGFPGNPGVPGQPGAKGERGDSS
GYPGSPGAKGESGTPGYPGGQGANGAPGDNGFPGGPGFSGQKGAPGVPGRPGLLGTPGFT
GAKGLNGYPGGRGLDGTTGRPGSPGSSGEKGLPGSPGLDGLNGLAGPKGIPGTPGYSEEG
RPGTPGAAGLKGERGSSIPGPPGYNAEKGARGESGGAGMTGFPGLPGRRGETIGSNIPGP
LGDPGLPGLDGEEGYGGPPGPPGPPGPSTAQGDRGDAGLPGFPGTPGRRGDPGGPGGPGR
EGSPGFNGERGDSGYSGVSGTKGYPGDPGYYGGKGPKGRKGSSGRKGAPGITLPPPIFQT
PYGEVGGPGLNGAPGAMGEPGNPGIPGRGGPKGRPGAVGKLGRNGGSGLNGPLGDPGSPG
FPGPSGSQGLPGKPGLQGPPGSVARSRSVGFTLVKHSQNNQVPMCPQGMSRLWEGYSLLY
VEGQEKAHNQDLGMAGSCLPRFSTVPFLYCTPNEICYYASRNDKSYWLSTTAPIPMMPVG
EEAISQYISRCSVCEAMSQAVAVHSQDLTIPTCPAGWRSLWIGYSFLMHTAAGAEGGGQS
LVSPGSCLEDFRATPFIECNGAKGTCHFFANKYSFWLTTVEPSREFNPPPMDTLKGGNQL
SRVSRCQVCSKIL
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgacattctggatttgtgtacttgctgtcagctgggcagttgaagcgacacacgggggg
accagccaggagccctgtaatgggctggactgtagcggaggatgtaactgtaacccagag
aaaggtggcagggggcgtccaggggcattggggccagtaggacccggtggaccagagggg
ttcccaggcgaccaagggcctttcgggcaaaaaggagagaagggccacgtcggacgcatg
ggcccctctgggctgaaaggagaccaggggcccatgggcgtcccagggttcccaggaaac
gacggagtcccaggtcacccaggtcaggacggtggcaggggtctaccagggtttgatggc
tgtaacggtacccagggagacccaggtcccagagctctagacggaggaatacctggagct
tcaggactccctgggcctaaaggtcctaaagggcagaagggagaacctgtatatgttgga
accatagggggagctcctggtttgcctggactggacggtgtacctggtcctggaggtcct
gacggaaggcctggtgacatcggccccagtggtcctgaaggattacttggcaatccaggt
ccccccggtccccctggtcctgtagggagccccagcctaggcttccggggggagccagga
gataagggcaacacgggtccacccggacctcgaggcgtgcccggcgacgagccgctagta
ggctcatctattaccactatctacaaaggagataagggggaagggggttacaaaggagta
cgtggaccatctggtagacccggcctacctggtccttttggctatcctggcgagaaggga
gagaatggaattctggggtatccagggggacggggtcctcctggttttaatggacctccc
ggatctcctggaagacagggattcacaggcagtccggggttccccgggcaaccaggttac
agtggacctaagggtgaccagggggaacaggggcctcccggaccccccatctacgcagac
acacaagggctggctgttcaaggagcaccaggtgacaacggtatcgacggcttccccggc
caaccaggtgacgctggcactccagggtttccaggacaaccaggacgaccaggcgactcc
ttcggcgatggtcgaggaggcagcccagggttccctggtaccccagggcctaagggagag
aggggtaaccccggcagacagagttacggccctgagggcctaccaggaggaccaggctta
ccaggaccccctggacctcccggaccaccaggcagatctgtcaacatccagcccggcagg
tttgacaatctaccaggagcgccaggacgaccaggaggccagggaccacctggagccagc
ggatacaaaggacccaaaggggaactgggtgactgtaactgcctgggaggaggcaccacg
ggtggggtgggagcaccgggggctcctggggctgatggaagacctggggccttcggcagg
aagggcgaaagcggagacccaggcatacccggtttcggaggacaaccaggaacacctggc
cgtgtgggcgagaggggtttctttgggcgtaaaggagaaaagggtgcctccttctacccc
tcgttcagccgagggatcaagggtgaacagggggcccagggccttcgagggccccctgga
aacatgggtcgacccgggagagacggacttcctgggtcccccggacagcctgggcctcct
gctgatgttgatggctatggaaccattggagagagaggattcccagggttgtcaggcgcc
aaaggtcgcgccggtgaacctggagagaacgggattggctaccagggtaccatcggcccc
cgtgggtttccaggcgactcgggctttacggggttaccagggcaacctggtttacctggc
cctccaggtgacagctgtgggcaggagggggttaatggcgcagagggagggctaacgcta
ccatgtcgtctacctggtgaggatggaaaccccggcttccccggaatacctggaagacta
ggtcccaagggcgagccaggtttcccaggtggtcccggtcggcccggttttgacggaggg
aagggagagagaggagacccaggttacgggggccagcctgggccacaaggtttccctggc
cccagaggagatgcggggggcccaggtattccaggcgagggtcgtccaggggccccaggg
aagaacgggctcccggggcggccgggggagaagggccggccaggggaggtgctggggtcc
tcaacagggctccctggaccacctgggttcccaggaggaccaggagacaagggagagcca
ggagcatcaggacttcccggaggatcaggttttgatggtcggtcgggcattcccggagct
aagggtgagcgcggtacggatggctaccccggaactctaggtcttcccggacttcctgga
gacagaggcaatggatttcccggtcctgctggaccatccggaagcaaaggattacccgga
tctccaggctgtcaaggctaccccggtttaaaaggagccagaggtgacgcgggcttccca
ggcccaactgggaggaaggggcaaccagggcaaccaggaggggatggatcatcaggactc
aggggccttccgggaccaccgggccccgggggaagaaacggcatccctgggggaccagga
aggaagggcgagagcggttaccctggactggcaggtttccccggaatgccaggtaaccct
ggaagacccggtggaccaggaggtaaaggagctccggggttctcaggaaaagacggcctg
cccggtgtcttcggagcgccaggacctaaaggtgacgaaggttaccgtggtctccctggc
ccacccgctctgccccccagagtagattacctggagaagggacagaggggcgataacggt
gccaacggactacccggtttccctggacctagaggtgacaagggtttcccaggccagcct
ggtcgtcagggtttgcccggactgcctggttatgctgacagggctaaaggagaaccagga
cttcccggtctccccggacgcccagccggtccaggctacccaggccctaaaggatctccc
ggtatcatcggcttccctggcatgcctggaccaaggggtgacgatggcaggcctggtttc
cctggtaaccccggagtccctggtcagccaggtgctaaaggggagagaggtgactcgtcc
ggctaccccggaagtcccggagctaaaggtgagtccggaacccccggttacccaggtggc
caaggtgctaatggcgcccccggcgacaacggtttcccagggggccctgggttcagcgga
cagaagggagcaccgggagttcctggaagacctggactcttgggtacccctggtttcact
ggggctaagggtctgaacggatacccaggaggaagaggtctcgacgggacaactggccgc
cccggctcccctggatcatctggagaaaaaggtctgccgggatctcctggtcttgatgga
ctcaacggactggctggaccgaagggtataccaggaaccccgggttatagtgaggagggt
cgccccggcacccctggagcggccggtctgaagggagagaggggatcctccatcccagga
cccccgggatacaacgcggagaagggagcgagaggagagtcagggggtgctggtatgaca
ggcttcccaggtctgcctggtcgtcgtggggagacaatcggctccaatatccctggacct
ctgggagacccaggcctgcccggactcgatggagaagaaggttacggtggtcctccaggc
cccccaggcccaccggggcccagtacggcccagggagacagaggtgacgctgggctacct
ggcttccccggtacccctgggagacgtggagatcctggaggtcccggtggcccaggaagg
gaaggcagccctggattcaatggagagagaggcgactctgggtacagtggagtgtcagga
accaaaggctaccctggagatccaggatattacggagggaaaggacccaaaggaaggaaa
ggttcttctggtcgtaagggggccccaggtataactttaccccccccgatcttccagact
ccctacggagaagtgggaggccctgggctcaacggcgctccaggggccatgggagaacca
ggcaatcctggcattccaggcagagggggtcctaaaggaaggcccggtgcggtggggaag
ctggggaggaacggagggtcaggtctgaatggacctctgggagaccctggttctcctggt
ttccctggaccttccggatcacaaggtctgcctggtaagcctggtctgcagggtcccccc
ggcagtgtggcccgcagcaggagtgttggtttcaccctggtgaaacacagtcagaacaac
caggtacccatgtgtccccagggcatgtcccggctctgggagggatacagtctgctgtac
gtagaggggcaggagaaggcacacaaccaggacctcggtatggcgggctcctgcctcccc
cgtttcagcactgtccccttcctctactgcacgcccaacgagatctgttactacgccagc
cgcaacgacaagtcctattggctgtccaccactgcgcccatccccatgatgccggtggga
gaggaggccatcagccagtacatcagcaggtgctccgtgtgcgaggccatgtcccaggct
gtggctgtccactcccaggacctcaccatccccacctgccctgctggctggaggtctctc
tggatcgggtactccttcctcatgcacacagctgccggggctgagggcggaggccagtcc
cttgtttcacccgggtcctgtctggaagacttccgtgcaactcccttcatcgagtgtaac
ggggctaagggcacctgccacttctttgccaacaagtacagcttctggctgaccacggtg
gagcctagccgggagttcaacccccctccgatggacacgctgaagggaggcaaccaactg
agcagagtcagtcgctgtcaggtctgcagtaagatcttgtag
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