Salmo salar (Atlantic salmon): 106578467
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Entry
106578467 CDS
T04363
Symbol
trpc1
Name
(RefSeq) transient receptor potential cation channel subfamily C member 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sasa04040
]
106578467 (trpc1)
Ion channels [BR:
sasa04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
106578467 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
106578467
NCBI-ProteinID:
XP_014012758
UniProt:
A0A1S3NBC1
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Position
ssa19:12556248..12589730
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AA seq
805 aa
AA seq
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MVKWSLAPSSGMHISVLPYSFSVAMAALYQVTDVSSPDKFLALKDVREVKEETTLDEKLF
LLACEKGDYYMVKRLLEEKTELNINCVDVLGRDAVTISIENQNLDILKLLLEHGCQATDA
LLVAIDSEVVGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYE
ILTMLLKQDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDP
ILRAFELSADLRELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHMANED
TVDKRGLMEERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKMST
VLSVAVLWPLLSLCYLVVPRSRVGHIIHTPFVKFIIHSASYFTFLLLINLYSLVYNEGKK
NTMGPALEMIDYLLILWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLSTFALK
IVAHSKFKNVEDTERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISVG
QMLQEFGKFLGLFLLVLISFTIGLTQLYGKDQKDPAKSPAKDCEGIFCQQQSNDAFHTFM
GTCYALFWYIFSLAHVALFVTRINYTEELRSFVGALIVGTYNIVVVIVLTKLLVAMLHKS
FRQIANHEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTVCYLLTSMSKWICSHTST
GKVKRQNSLKEWRNLKRKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDL
SKFRNEMRDLLGFRTSKYAMFYPRS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggttaaatggtcgctggcgcctagtagtgggatgcacatcagtgttctgccctactcc
ttctccgtcgcaatggccgctctatatcaggtcacggacgtgtcctctccggataaattt
ctggccctgaaagacgtgagggaggtgaaggaggagactactctggatgaaaagctcttc
ctactggcctgtgagaaaggtgactactacatggtgaagagactgctggaggagaagaca
gagctcaatatcaactgtgtagatgtgctggggagagacgctgtcaccatctctatagag
aaccaaaacctggacatccttaaacttctgctggagcacggctgccaggcaacagatgct
ctgttagtggccattgactcggaggtggtgggagctgtggacatcctcctcaaccatcgc
cccaggaggtcctctaagccctccatcgctaaactgatgcagcgcatccagaaccctgag
tactccaccaccatggacgtggctccagtgatcctggcggcccataggaacaactatgag
atactgaccatgttgctgaagcaggatatctccctgcccaggcctcacgctgtgggctgc
gagtgtactctctgtaatgccaagaacaagaaggacagcctacggcactccaggtttcgt
ctggacatctacaggtgcctggccagcccgtctctgattatgctgaccgaggaggacccc
atcctcagggcctttgagctgagtgctgacctcagggagctcagcctggtcgaggtggag
ttcaggaatgactatgaggagctggctaagcagtgtaagatgtttgctaaggatctcctg
gcccaggcacgtaactccagagaactggaggtgatcctcaaccacatggccaatgaggac
acagtggacaagagaggcctgatggaggaacgcatgaacctcagccgactcaaactagct
atcaagtacaaccagaaagagtttgtggcccagtccaactgccagcagttcctcaacaca
gtctggttcggcgagacggccagctaccggcgtaaacacacgtgtctgaagatgtccacg
gtactgagcgtggcggtgctgtggccgctgctctccctgtgctacctggtggtaccgcgc
tcccgcgtgggccatatcatccacacgcccttcgtcaagttcatcatacacagtgcctcc
tacttcaccttcctcctgctcatcaacctgtactctctggtgtacaatgagggcaagaag
aacaccatgggccctgccctggagatgattgactacctgctcatactctggatcataggg
atggtgtggtcggacgtgaagcgtctatggtacgagggcttggaggacttcctggatgag
tcgaggaatcagctgagcttcgtcatgaactctctctacctgtccaccttcgccctcaag
atagtggctcacagcaagtttaagaacgtggaggacacagagaggaaaaactgggatgcc
ttccaccccatccttgtggctgaggggctgtttgccttcgctaacgtcctgagctaccta
cgactgttcttcatgtacaccaccagctcaatactgggcccactacagatctccgttggc
cagatgctgcaggagtttggtaagttcctgggtctgttcctgcttgtgctcatctctttc
accatcggcctgacgcagctctacgggaaggatcagaaggacccggccaagagtcccgcc
aaagactgtgagggcatcttctgtcagcagcagagcaacgacgccttccacacgttcatg
ggaacgtgctacgctctgttctggtacatcttctctcttgcccacgtggctctcttcgtg
acccggatcaactacacggaggagctgaggtcatttgtgggagccctcatcgtgggcacg
tacaacatcgtggtggtcatcgttctcaccaagctgctggtcgccatgctccacaagagc
ttcaggcagatcgctaaccacgaggataaggagtggaagtttgcccgcgccaagctgtgg
ctgagctactttgacgacaagtgtaccctgccgccgcccttcaacatcctaccctccccc
aagactgtgtgttaccttctgaccagtatgagtaaatggatctgctcccacacctccacg
gggaaggtcaagagacagaacagcctcaaggagtggaggaacctgaagcggaagcgtgat
gagaactaccagaagatcatgtgttgtctggtccatcgctacctgacgtccaccaggcag
aagatgcagagcaccgaccaggccaccgtagagaacctcaacgacctgcggcaggacctc
tccaagttccgcaacgagatgagagacctgctgggattcagaacctccaagtacgccatg
ttctacccccggagctaa
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