Salmo salar (Atlantic salmon): 106578660
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Entry
106578660 CDS
T04363
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A-like
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106578660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sasa03032
]
106578660
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106578660
DNA replication proteins [BR:
sasa03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
106578660
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106578660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
106578660
NCBI-ProteinID:
XP_014013183
LinkDB
All DBs
Position
ssa19:complement(31748859..31810973)
Genome browser
AA seq
1513 aa
AA seq
DB search
MEKKDIVKFVDVNGRKTDLAVKAYEAIMELQSEKHLKTIDEEVALQLDHDDKSLFVFSSF
STPAFHHCKKLGCRVVSPLVVHFCLQHQRCVPKAEQPVYNMAMADITISCTSLDKEARAD
VMALVQLMGGRVYRDLNVSVTHLVAGEVGSKKYLVAASLGKPIVLPTWVKTCWEKSQNSL
FRHTDLPIEDYVCPVLRGCTVCVTGLSTVERKEVQRLCQQHGASYTGQLKMNECTHLIVS
KPSGQKYEYAQKWNVFCVSLHWLFDSIEKGFCQDESLYTSIPTSKKKEEFLLGLSQISVN
TSMTVDDTAMTNATVSRLDTPDPIDALDITVCPTDDLLDGCKLYLCGLPGKRLEKLRRLV
NIAGGLLLNQPSEDLTHVVMGDQDEDTKTFLAKATHRPHVVTVQWLLDSFSRGSLLPEGD
YHHLACLPPAPAAMAMPAPRTSASHPSSTSSAAPPATLRHRKAKEDMLSQYMDDDQRVVE
MPPPADGNSHRRQSAAAPEPWVSAPDQSTTADGDGASADTTLQEASEAGLFAGKRFLLLG
FGAEVEAQHSMLVTENCGKVLVGHTRVVVDYAVVPLFGCEVEATVDEVVTDTWLAMCVEQ
QCMLELGSHALFSPVPVIEGCSPLRDCVLSVSQFTGAERESVVELAKHLGASVQDYFVRM
VNQRNGMLASTHLVLQSPEGTKYQAAQKWGLPAVTLRWVLESARTGRRAEEGDFLVDLPP
SPEREEESFVGGPQKHSMLPPLSRIKSPVIPLLGPQRGAAVTPLDMGRFQSKVFRSVLEQ
GLPEKDCTTLRGQEGGRKARGQKDSPALQLDTPSRFLYRDQLFRPTFNVKDALAVLDTPG
GRTQYGQATTLLSEVIGRNLKVALANSTHSHTPDLQALTASPQLCKETHREVEEQEAAPL
AGVMICVSKKLSKKQGELNAIAASLGADFRWSCDDTVTHYIYQGRVGDNTREYRAVKERG
VHVVSQHWLQACAEDQRHVSESLYPFTYNPKMSLNLSQVPPDSSQRSTPATHTSQLGDLT
EAQKNKSEDNAVEDATTSHRISEGLTDTEQDQDNTERRDLSETLKMRENLQRQLQEIMSA
TKMTTGRLSSARLTRQCSGESDSEPHTPDRQARMGRNATGRRALEALRMSRQAAVDLNTE
PPQSEQIVWDDPTAREERAKLADNLQWPISSSQHSEPLAAPLSHHAGHTLRDSMTDSELV
EIAVCDVTDQQMGQRVMTPLVEEPKPDLTLKSPSIAFPLANSPVPPEPQTEEESVAEKKP
PRFQLSSLIPQERIDYTALIDELGGVVLDKQCFDPSCSHIIVGTPLRNEKYLAAMAAGKW
ILHRSYLEACRSVGHFIQEDEYEWGSSSILDVLPSISSQQKRLALAAMRWRRNLQYRNDQ
EGSFSGWTVMLNIDQTRVSGFRRLLQSGGAKVLPSPSPSLYKGTTHLFAEFSRLKPGDFR
VDVPEAMSQGVKCLKPEFIADYLIQDPILPIEMYYLPEAAQCLPAGTDAIRATPSHKRKA
TGDSSKLKKTRLK
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atggagaagaaagacattgttaagtttgtagacgtcaatggacgaaagacggaccttgct
gtcaaggcctatgaggccatcatggagctccagtcagagaagcacttgaagaccattgat
gaggaggtggcgttacagctggaccatgatgacaagtctctgtttgtcttcagtagcttc
tccacacctgccttccaccactgtaaaaagctgggctgtcgagtagtgagtccactagtg
gtgcacttctgcctgcagcaccagcgctgtgtgcccaaagcagagcaacccgtctacaac
atggccatggctgatatcaccatctcctgcaccagtctggacaaggaggctagggctgat
gtgatggctctggtgcagctgatgggagggagggtctaccgggacctcaacgtgtccgtc
actcacctggtcgccggggaggtcggcagcaagaagtacctggtggctgccagcctgggg
aagcccatcgtattgcccacctgggtaaaaacctgctgggagaaatcacagaacagcctg
ttcagacacactgacctgcctatagaggactatgtgtgccctgtgctccgcggctgcacc
gtctgtgtcacaggcctctccacagtggagcgtaaggaggtacagaggctctgccagcag
cacggtgccagctacacaggacagctcaagatgaacgagtgcacccacctcattgtcagc
aagccctctggtcaaaagtacgagtatgcacagaagtggaatgtcttctgtgtatctctg
cactggctgtttgacagcatcgagaagggcttctgccaggatgagagcctctatacctcc
atccccaccagcaagaagaaagaggagtttctgttggggttgagtcagatttctgtgaac
accagcatgaccgtggatgacacggcgatgaccaatgccacggtcagccgtctggacact
ccagatcccattgatgctctggacatcacagtctgccccacagacgacctcctggacggc
tgcaagctgtacctgtgtgggctgccagggaagcggctggagaagctgcgtcggctggtc
aacatagccgggggcctgctcttaaatcagcccagcgaggacctcacccacgtggtcatg
ggagaccaagacgaagacactaaaaccttcctggccaaagccacacacaggcctcatgtg
gtgacggtgcagtggctgctggacagcttctccagaggcagcctgctccctgagggggac
taccatcacctggcctgtctgcctcccgcccctgcagctatggccatgcctgccccccgc
acctccgcctcccacccctcttccacctcctcagccgccccccctgctaccctccgacac
aggaaggccaaggaggacatgctatctcagtacatggatgatgaccagagagtggtggag
atgcctcctccagctgacggtaacagccacagaaggcagagtgctgcagcgccagagcct
tgggtctcagccccagaccagtctactactgcagacggggatggggccagtgctgacacc
accctgcaggaggccagcgaggcgggcctgtttgcgggaaaacgcttcctcctgttgggc
ttcggggctgaggtggaggcccagcattccatgctggtgacggagaactgtgggaaggtg
ctggtggggcacacgcgggtggtggttgactatgctgtggtgcccctgtttggctgtgag
gtggaggccactgtggatgaggtggtcactgatacctggctggcaatgtgtgtggagcag
cagtgtatgttagagctgggctcccatgcccttttcagccctgtgccagtgatagagggc
tgctccccgctcagagactgtgtcctctcagtcagccagtttactggggcagagagggag
tccgtggtagagctagccaaacacctgggagccagtgtccaggactactttgtacgcatg
gtcaaccaaaggaacggcatgctggccagtacccacctagtgctgcagagccccgagggc
accaagtaccaggcggcccagaagtgggggctgcctgccgtcaccctgcgctgggtgctg
gagtctgccaggacgggccggagggcagaggagggggacttcctggtggacttgcctcct
tctccagagagagaagaggagagttttgtggggggcccccagaagcattccatgctcccc
cccctgtcccgtatcaagtccccagtgattcccttgctgggcccccagaggggggcggca
gtcacccccctggacatgggccgcttccagagtaaggtgttccgctccgtgctggaacaa
ggcctgccagagaaggactgtaccaccctgagaggccaggaggggggcaggaaagcaagg
gggcagaaagactctccagcgctgcagttggacactccctcccgcttcctttaccgagac
cagctcttcagacccaccttcaacgtcaaggatgcgttagcggtgttggacacgccaggg
ggcaggactcagtacggtcaggccacgaccctgctgtcagaggtcatcgggaggaacctg
aaggtggccctggccaacagcacccacagccacacccctgacctccaggctctcacagct
agcccccagctttgcaaggagacacacagagaggtggaggagcaggaggctgctcccctg
gctggcgtgatgatctgcgtgagtaagaaactgagcaagaagcagggagagctcaacgcc
atcgctgcctcactaggagctgacttcaggtggtcgtgtgacgacacggtgactcactac
atctatcagggtcgtgtgggggacaacacgcgagagtacagggctgtgaaggagcgaggg
gtgcatgtggtgtctcagcactggctgcaggcgtgtgctgaggatcagaggcatgtgtct
gagtctctctacccattcacctacaaccccaaaatgagcctgaacctcagccaggtgcct
cctgacagtagccagaggtctacccctgccacccatacctcacaacttggagacctcact
gaggcccaaaagaacaagtctgaagacaatgcagtggaagacgccactacttcccaccgc
atcagtgaaggattgactgacacagagcaggaccaggacaatacagagaggagagacctg
tctgaaaccctgaagatgagggagaacctccagaggcaactgcaggagatcatgtcagcc
accaagatgactactggccggctctcctcggcccgcctcacccgccagtgctccggggag
tccgactctgaaccccatacccccgacaggcaggcccgcatgggccgcaacgcaaccggc
cgacgcgccctggaggcactgaggatgtctcgtcaggcagccgtggacctgaacacagag
ccacctcagagcgagcagatcgtgtgggacgatcccacggcccgggaggagagagccaag
ctggctgacaacctgcagtggcccatcagctcctcccagcactctgaacccctagcagca
cccctctcccaccacgccggacacaccctcagggactccatgaccgactctgagctggtg
gaaatagcggtgtgtgatgtcactgaccagcagatgggtcagagagtgatgaccccgcta
gtggaggagccaaagcctgacctcacccttaaatcccctagcattgcattccctctcgcc
aactctcccgtgcccccagagccacagactgaagaggagagtgtggcggagaagaagcct
cctcgattccagctgtcctcccttatcccccaggagaggatcgactacaccgccctcata
gacgagctgggtggtgtggtgctggacaagcagtgctttgaccccagctgctcccacatc
attgtggggacccctctgaggaatgagaagtacctggcagccatggccgcggggaagtgg
atcctgcaccgctcctacctggaggcctgtcgctccgtgggacacttcatccaggaggat
gagtatgagtggggcagtagctccatcctggatgtgctaccgtccatcagctcccagcag
aagaggctggcgttggccgccatgcgctggagaaggaacctgcagtaccgcaatgaccag
gagggatcattcagtggttggaccgtcatgctgaacatcgaccagaccagagtgtcaggg
ttcagacgactcctgcagtctggtggagcaaaggttctccccagtccctctccatctctg
tacaagggaaccacccacctgtttgcagagttcagtcggttgaagccaggagacttccgg
gtggacgtgccagaggccatgtcccagggggtcaaatgcctaaagccagagttcattgca
gactacctcatccaggaccctattctaccaatagagatgtactatctgcctgaagctgcc
caatgtctgccagcgggcacagatgccatccgcgccacaccctcccacaagcgcaaagca
acaggagattcctcaaagttgaagaagactcgcctcaagtaa
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integrated database retrieval system
