Salmo salar (Atlantic salmon): 106578689
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Entry
106578689 CDS
T04363
Name
(RefSeq) transcription factor Sox-17-alpha-A-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
106578689
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106578689
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106578689
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
106578689
NCBI-ProteinID:
XP_014013267
UniProt:
A0A1S3NCY8
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All DBs
Position
ssa19:30214570..30216919
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AA seq
393 aa
AA seq
DB search
MSSPDAGYASDDQTQARCAMSVMMPGMGHCQWADPLSPLGDTKVKSESCATSSGNQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVSEKRPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQSTSVGGDGRVCMEGLGMGY
HHEHGYQMSTQSLGHYRDAQGLGVASYEPYSLPTPDTSPLDAVESDSMFFHSQEECHMMP
AYAYHSQGAEYTPQDPHSNQHANHMLHRHLSSPTEQQQGHQAGPMPPSFNQLAMYYSQHC
SPRHPKRHPGHGTGQRSPPPDSHPADQVEQMHPSELIGEVDRSEFEQYLNSSRPGDMTGL
SYGSHEANMQGPESLISSVLSDASTVFYCNYTS
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtccggatgcgggttacgccagtgacgatcagacccaggctaggtgcgcgatg
tcagtcatgatgcctggaatgggacactgtcagtgggcagaccccctgagccctctcggg
gacaccaaagtgaagagcgagtcgtgcgctaccagctccgggaaccagaaccgtggaaag
actgagccgcggatccggcgacccatgaatgcgttcatggtgtgggcaaaggatgagcgc
aagcgactggcacaacaaaatccggacctgcacaatgcggagttgagcaaaatgttgggg
aagtcgtggaaagcccttcctgtgtccgagaagcgcccctttgtagaggaggctgaaagg
ctccgggtccagcacatgcaggaccaccccaactacaaataccgaccccggcggaggaag
caggtgaagaggattaagcgtctggactcagggttcctggttcatggcgtgtccgaccac
cagagcacctccgtgggtggggacggccgagtgtgtatggagggcctggggatgggttac
caccacgagcatggctaccagatgtcgactcagtccctcggccactaccgcgacgcccag
ggcctcggggtggcttcctacgaaccctacagcctgcctacccccgacacctccccactg
gatgccgtggaatcagactccatgttcttccactctcaggaggagtgccacatgatgcct
gcgtacgcctaccactcccagggggcagagtacacgcctcaggaccctcactccaaccag
cacgccaaccacatgctccacagacacctctcctcccccactgagcagcagcaaggccac
caggctggccccatgcccccctctttcaaccaattggctatgtactacagccagcattgt
agcccccgtcaccccaagcgacacccaggacatgggacaggacagcgctcccctccccca
gactcccacccagcagaccaggtggagcagatgcatccatcagagctgataggtgaggtg
gaccggagtgagtttgaacagtacctgaactcctccagacctggagacatgacaggcctg
tcttatgggtcacatgaggccaacatgcagggacctgagagcctgatatcctctgtgctc
tctgatgcgagcacagtgttctactgtaactatacctcctaa
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