Salmo salar (Atlantic salmon): 106579502
Help
Entry
106579502 CDS
T04363
Symbol
pan3
Name
(RefSeq) PAN3 poly(A) specific ribonuclease subunit
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106579502 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106579502 (pan3)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106579502 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
106579502 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
Pkinase
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
106579502
NCBI-ProteinID:
XP_014014922
UniProt:
A0A1S3NHP7
LinkDB
All DBs
Position
ssa19:complement(67390969..67412982)
Genome browser
AA seq
831 aa
AA seq
DB search
MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMASMSLHGGGSP
VPLSMSGGAVTAAGYPLSAPPACPVGVPTVTKKSDSLGSAGTALDGQLLTIPGMEGGTDA
NLTNSYFSSSFIGVNGFGSPAESKYSMMQRMTSSSSSSSPSLLDDGAKNFSHSAHDLFHG
TLAVGPGQSCGSMENSPWTTQSSFPLPLCPLPDPVSSPMSSLFSDFGALSISQRRKAPNP
TANEFIPKGVPRMATMVQSSVPAFPLPLFPHPSSSTAAALAPGMSLSAGSSPLHSPKITP
HTSPAPRRRSHTPNPNNPNPANYMVPTSVSDQGAHIIQKETVGGTTYFYTDNTPAPMAGM
VFPTYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQSENTGVPSEV
DSYHSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDLPYCLRRVHGFRLVNTKCMML
VDMWKKIQHSNSVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPTADSYFTKRK
WGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRV
NCVGVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELV
SINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQN
GRLFRLLAKLGTINERPEFQKDRTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVS
CLNKLDAGVPEKINLVSRDEKSVLVVTYLDLKRCFDSTFQELQQAAATGPL
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccgctcgggggtgtcggaataccctgcgtg
aaggtgaagttctgccgatactacgcaaaggacaagacttgcttttatggggacgagtgt
cagtttttgcacgaggaaccgtccatggcaagcatgtctcttcacggtggaggaagccct
gtccctttatccatgtcaggaggagccgtgacggcagcggggtatccgcttagtgcaccc
ccggcctgcccggtaggggtgccgaccgtcactaaaaagagcgactctctggggtctgca
ggcacggctctggatggacagctgttaaccatccctggtatggagggtgggaccgatgct
aatctgaccaactcctacttcagcagcagcttcattggggtcaacggcttcgggagcccc
gcagagtctaaatactcaatgatgcagagaatgaccagcagtagcagcagcagttctccc
agtctccttgatgacggtgcaaagaactttagccacagcgctcacgatctattccatgga
accctcgcagttggaccaggtcagagttgtgggtcgatggaaaactccccttggacaaca
cagtcttcattccctcttcctctatgtcctcttccagatccagttagttctcctatgtcc
tcactcttcagtgactttggtgctctgagcatatcacaaaggagaaaggctcccaaccct
acagccaatgagttcatccctaagggggttccccgcatggccactatggtccagtccagt
gttccagccttccccttgcccctcttcccccaccccagcagctccactgccgctgcccta
gcacccgggatgtctctttctgcagggtcctcccccctccactcccccaaaatcaccccc
cacacctcccccgcccctcgccggcgcagccacacccccaaccccaacaaccccaatccg
gctaactacatggtgcccaccagtgtgtctgaccagggggcccacatcatccagaaggag
acggtgggggggaccacctatttctacaccgacaacacccccgctcccatggctgggatg
gtgtttcctacctaccacatctacccccccactgctccccacgtggcctacatgcagccc
aaagccaacgccccgtccttcttcatggctgatgaactccgacaggagctgataaacaga
catctaatcaccatggctcagatcgaccagtcagagaacaccggtgttccatctgaggtg
gacagctaccacagcctgtttcccctggagcctgtcccacctcccaaccgcctgcagaag
accagtaacttcagctacatcacttcctgctacaaggccgtcaacagcaaggacgacctg
ccgtactgcctgaggagggtacatggtttcaggctggtgaacaccaagtgtatgatgctg
gtggacatgtggaagaagatccagcactccaactctgttaccctgagggaggtcttcacc
accaaggcctttggagaccactcgttggtgttttcctatgacttccatgcgggggcagag
accatgtttagcaggcacttcaacgaccccactgccgactcctacttcaccaagaggaag
tggggacagcatgagcccccaccgccccggcagcacgctggtctgcttcctgagtctctg
atctgggcctacatcgtccagctgagctcagctctcagaaccatccacactgctggcctg
gcctgtagggtcatggaccccagcaagatcctcatcaccggcaagaccaggttacgggtg
aactgtgtaggggtgttcgatgtcttaacgtttgacaacagtcagaccaaccatgtgacc
ctcatgccacagtaccagcaagcggacctgatatccctgggcaaggtggtgttggccctg
gcctgtaactctctggccggcattcagagagagaacctgcagaaggccatggagctggtg
tctatcaactactcatcagacctcaagaacctcatcctgtatctgctgacagagcagtca
aggctgcgaagtgtcaatgacatcatgcctatgatcggagctcgcttctacacacagctg
gacgcatcacagatgaggaatgatgtcatcgaggaggaccttgccaaggaggtccaaaat
ggtcgtctcttccgtctgttggccaaactgggcaccatcaacgagaggccagagtttcag
aaggaccgtacgtggtcggagacaggagaccggtacctgctgaagctgttcagagaccac
ctgttccaccaggtgacggaggctgggaccccctggatagacctcagccacatcgtctcc
tgcctcaacaaactggacgcgggcgtgcctgagaagataaacctggtgtctcgtgatgag
aagagtgttctggtggtgacctacttggacctgaagcgctgcttcgacagtaccttccag
gagctgcagcaggccgctgccactggccccctgtag
DBGET
integrated database retrieval system
