Salmo salar (Atlantic salmon): 106580047
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Entry
106580047 CDS
T04363
Symbol
cssa20h9orf84
Name
(RefSeq) chromosome ssa20 C9orf84 homolog
KO
K28108
shortage in chiasmata 1
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sasa03036
]
106580047 (cssa20h9orf84)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Meiosis-specific proteins
Others
106580047 (cssa20h9orf84)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
PemK_toxin
Motif
Other DBs
NCBI-GeneID:
106580047
NCBI-ProteinID:
XP_014016086
UniProt:
A0A1S3NLK1
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Position
ssa20:16379975..16404379
Genome browser
AA seq
1524 aa
AA seq
DB search
MNWLALPMPYHLGSSDLYPHTGNPPEVTYRKPWSRGNVISNCKLFVSGSVLDDLSIKGQP
TSSLEKLSVSLTQVRVDLLEVISSSNPNSQLDLDRDEAAWLLREARKDKGHFVCNESFSK
STGEKMRPSHQHDDLVMPEEVLFADHLPQFRKHLPSMKAKLSRLRNLPVSDPLLSSTGGT
LSEEAIFRHCAAYEVPLDAETESSETCSNTDEDFSKELLLNEESLMLPVEMDTCTPKRED
CLPFSNIPKLLNVVPELMEERTSCLDMLTKATPSDALESVDISQFEVPRLPVNDSHCEIN
EILLDLKSSDHLVLPTQMEMDLPLTPSPKPNLTQLCLASSQLPAEQISPLYRYYFVSEKD
QEEMEQALWRAEKHLDLVVGFLLAEPQKSESVVQLQPLTEVLLGIGRDNSVRLDEGMELS
LLGTNSPGLTGMYGNGSSDFTESMMISDQPHLMETLSSMIEDFTLLSPCQMDNILSESVD
HSELSGPPSEIKGRSILKNATPMVVLYHQERERAGNTVVSAPAVSTSQERERTGNVALTA
QASTSSQEKERSGTVVFSTQAVSTSREIERAGSMAISAAQATTTTYLEKLNHAVRPQKKE
GLPDQTANVSKLPTPRPSVRDRHMSLPVAKPQKDLDPLSTFMMLRAQQRTYVSVSPQNYT
STPVAQVEQQTPQPPTTEMRPAYAVTGNDIRAPEAIIQPVPEDRHNSKVIHIQATESQFW
AYRELQAFALPCLSRARELGLTNTACGDFSILYPDHTRFLLKQQEKELSIRQGQDPEALF
NYVALIHVLVTVKDLLFKCDLSTAVEYLSKATEACAGQSLDKLVRKLEIVLYLSQKKQEP
NPKILELQEQLTTWVQSKSNGVQNSKVLVIITMDLDCARAMLIKALSQVTGEAVAAVCPE
ESRSKLEGSKVLDSLQHSCCVVVCSQHMEADFPWDCFSLVVEYSNTEHSPWAAVCTERNI
THITFQTRIPNSSVSDPESWSLEQSVPFVLFVTEGLLSCPLLLQILESTCNMTVLERSHS
QSLQMLGGTHHYAVITVDESTAVIIQEQEELCQERACESLVIRLTALSLQYSCCWLILHC
QQDSGLTSEGFNNLVLVYSSLVLFGLKTEDLDVKVLIVSEVVDIAKWICQIAFHTLLSSD
RDPLSYLDREWLSVISSEEERCLLGFPCVNPLVAQLMLSRGPSLHWLLGASLSQLQELLP
EVPHKVVKLFSDTTSLYKLTAAASSTESHTDFTHQKDHNSPTEPWATSRDNQYTHTDPHT
SRDLHADCNRHTHRDPEPFNSNCFLASSPSAESVVGSFYEESSVMTKEDGADFQVDLSPS
FGSQQAPFQHTWSHNPWEVEESDELKFVGWNRGRGGEEWTGSAPLHQESCGSPRNYAPEN
KFPTGLSSSFSYSTNTQRPAYSDNQMYSFSTVGYTDRLHYPDVSHYPSLASSRGALSWGG
RSSGSPYSTAQGREDMSVSPDYGTSYRTGMERKRRAEGPEMAGTVLTPLKRGKLSYEKVP
GRSDGQTRLSSPLSPWLVFLAVPQ
NT seq
4575 nt
NT seq
+upstream
nt +downstream
nt
atgaactggctggcccttccgatgccctaccatctgggtagcagtgacctctacccccac
actggtaacccccctgaggtcacctacaggaaaccatggagcagagggaatgtgatttcc
aactgcaaactgtttgtcagtggatctgtactagatgacttgagcattaaaggacaacca
acatcctctcttgagaagctgagtgttagtctgacccaggtgagagtggatcttctggag
gtgatatcgagctccaaccctaactcgcagcttgatttagatagagatgaagcagcgtgg
ctcctgagagaggctaggaaggacaagggacactttgtctgtaatgaatcctttagcaag
agcacaggagagaaaatgaggccaagtcatcagcatgatgatcttgtcatgccagaggag
gttctgtttgctgatcacttgccacagttcaggaaacatctgccctccatgaaagccaag
ttatccagactgaggaacctgcctgtgtcagatcctcttctcagctccactggaggcacc
ctgtcagaggaagctatattcaggcactgtgcggcctatgaggtaccccttgatgcagag
acggaaagctccgaaacctgttcaaacactgacgaggactttagcaaagagttgttgttg
aatgaagagtctctgatgttacctgttgaaatggacacctgcacacccaagagggaagat
tgcctccctttttcaaatattcctaaactattgaatgttgtgcccgaattgatggaggag
cgaacttcttgcctggatatgctcactaaagcaactccctcagatgcactggagtcagtg
gacatatcccagtttgaagtgccaaggctgccagtcaatgactctcactgtgagattaat
gaaatcctgctggatctcaagtcatcagatcacttggtgttgcctactcagatggagatg
gacctacccctcaccccctctcccaagcccaacctgacccagctctgtctggcctcctcc
caactcccagctgagcagatctctccactctacagatattattttgtgtctgagaaagat
caggaggagatggaacaggcactttggagggcagagaagcaccttgacttggtagtgggc
tttcttttggcagagcctcagaagtcagaatccgttgtgcagctccagcctttgaccgaa
gtcttattagggattggtcgggacaactctgtgagactcgatgaaggaatggaactatca
ctcctgggaacaaactcaccaggactgacagggatgtatgggaatggttcctctgacttc
actgagagtatgatgatctcagaccaaccccaccttatggagacattgagcagtatgata
gaggacttcacactactatcaccctgtcagatggacaatatattgagtgaatctgtagat
cactctgagttgtcaggcccaccaagtgagatcaaaggcaggtctatcctgaagaatgca
acgcccatggttgtgctatatcatcaggagagagagagagctgggaacacagtcgtttca
gcaccagctgtttccacttcccaggagagagagagaaccgggaatgtggccctcacagcc
caagcatctacttcttcccaagagaaagagagatctgggactgtggtcttttcaacgcag
gctgtttcaacttctcgtgagatagagagagctgggagtatggccatctcagcagcacag
gctaccaccactacttacctggagaagttaaaccatgccgttagacctcagaagaaggag
ggtttacctgaccagacagctaatgtatccaagctcccaacccccagacccagtgtgaga
gaccgtcacatgagtctcccagtggctaaacctcagaaggacttagaccctctgtccact
ttcatgatgttaagggcccaacagagaacctacgtctcggtgtcgcctcagaactataca
agcaccccagtggcacaggtggaacagcagacaccacagccacctacgacagaaatgagg
cctgcctatgcagtcacaggaaatgacatcagagcccctgaggcaatcattcagcctgtc
cctgaggacagacataacagcaaagtcatacacatccaagccacagagagtcagttctgg
gcgtacagagagctgcaggcgtttgctctgccctgcctgtccagagccagggagctgggg
ctgactaacacagcctgtggagacttcagcatcctgtacccggaccacacacgcttccta
ctgaaacagcaggagaaggagctcagcattcgacaaggccaggacccagaggctttgttt
aactatgtggcactgatacatgtccttgtgacagtgaaggacctgctcttcaagtgtgac
ctcagcactgcagtggagtacctatccaaggccacagaggcctgcgcggggcagagtctg
gacaagctagtgagaaagctggagattgttctgtatctcagtcagaaaaaacaagagccc
aatcctaagatactggaactgcaggaacagctgaccacatgggtgcagagcaagagcaat
ggggtccaaaactccaaagttctggtgataataacaatggacttggactgtgccagagca
atgcttattaaagccctaagccaagtcacaggtgaggctgtagctgcagtgtgtcctgag
gagagtcgaagtaagctggagggttcgaaagtgctagatagcctgcagcatagttgctgt
gtggtggtgtgtagtcagcacatggaagccgacttcccctgggactgtttctccctggtg
gtggagtacagcaacacggaacactcgccctgggctgctgtctgcacagagaggaacatc
acacacatcaccttccagaccaggatacctaattcctctgtgagtgaccctgagtcttgg
tccctggagcagagtgtccccttcgtgttgtttgtgaccgagggtctgctcagctgtcct
ctgttgcttcagatactggagtcaacgtgtaatatgactgtattggagaggagccactct
cagtccttacagatgcttggagggactcatcactatgctgtgattacagtcgacgaaagc
actgcagtcatcattcaagagcaggaggagctgtgtcaggagcgggcctgtgagagtcta
gtgattcgactgactgctctgtctctgcagtacagctgctgctggctcatccttcactgc
cagcaggactctgggttgaccagcgagggcttcaacaacctggtgttggtctactcctct
ctggtgctgtttggccttaagactgaggacctggatgtcaaggtgctgattgtatcagaa
gtggtggacattgccaaatggatctgccagatagccttccatacactgctgtccagtgac
agagatcctctcagctacctggacagagaatggctttctgtgatttcctcagaggaggag
aggtgcctcttaggtttcccctgtgtgaaccctttggtggcccagctgatgttgagtagg
ggcccctctctccactggctcctgggggcctccctctcccagctgcaggagctgctccct
gaggtccctcacaaagtcgtcaagctcttcagtgacaccacgtctctgtacaagctgact
gcggctgcctcctccacagagtctcacactgacttcactcatcagaaagaccacaatagc
cccactgagccttgggccacaagcagagacaatcaatacacacacaccgaccctcataca
agccgtgacctacacgctgactgcaaccgtcacacacaccgcgacccagaaccattcaac
tccaactgcttcctcgctagctcccccagtgctgagagtgtagtggggagcttctatgaa
gaaagctctgtcatgaccaaggaagacggtgcagacttccaggtggacttgagtccctcc
tttggctcccagcaggccccttttcagcacacctggagccacaacccatgggaggttgag
gagagcgatgagctgaagtttgtaggctggaatagaggaagaggaggagaggagtggacg
ggcagcgcacccctacaccaggagtcctgtggctcccccagaaactacgccccagaaaat
aaatttccgacgggcctctcatcctcattcagctacagcaccaacacacagagaccagcg
tactccgacaaccagatgtactcgttctctacagtagggtacactgaccggctgcactac
cctgatgtcagccactaccccagcctggcctcgtctagaggagctctgtcatgggggggc
agaagcagtggcagcccctacagcactgcccaggggagggaagacatgagtgtgtcacct
gactacgggaccagttacagaacggggatggagaggaagaggagagcagaaggcccagag
atggctggcacagttttaacgccattgaagaggggaaagctcagttatgagaaggtgcca
ggccgaagtgatggacagacaagactaagcagtccactgtctccgtggttggtgttttta
gctgtgccgcagtga
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integrated database retrieval system