Salmo salar (Atlantic salmon): 106580084
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Entry
106580084 CDS
T04363
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106580084
Membrane trafficking [BR:
sasa04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106580084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Fer4_11
DUF5764
Motif
Other DBs
NCBI-GeneID:
106580084
NCBI-ProteinID:
XP_014016185
UniProt:
A0A1S3NLS4
LinkDB
All DBs
Position
ssa20:complement(14207775..14264223)
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AA seq
3265 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQDNPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPRSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKHYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDGGAEAKEVKTGAFDELMTSAEKAKLYTAIGYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSAFFSPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESRPAPRNTNAHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLDIEGLGTELKLRTFDMTSYTFLREICLECPEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLLPPTKEVAPSQEELPTIPEEDEGEGEEGEKKEESAVAKKTSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSRRIAEIRIEGLVSEVLMRKKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSITLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDMTVVLRTLSGNLSETSDAASPPPP
PPPRTVDRSDTASTKGSQASGGTGTNPTSGNTVVTAAVVETQKSTKLKSTLKLDFKFDSM
TLVLYSPNGTEVQVLDLRDEQLKLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRC
RVKKITARMMAMRPDAERNVMVEVNYKQGRDGTSFDTVVQDVYLCASMEFLLTVADIFLK
ASQQGFSSATPKNSSSTKPTAAAASKESAPVVVAKSEINVLVKNPEIVFVADLTRADAPA
LVMTTECELVMKSDPDGQLMTAVVKDLKVVACPFLKEKRNKETTVLQPCQVFFKSTQSST
SPQAMEVCINALTLKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDL
KLWFLEEEGKDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDV
KNWSTLINLHSQLNLEVHYFNEVMGVWEPLLEPLEDETRDGFRPWTLGLKMKKKPVKYTG
ISEDVDYSIPDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASDSFQKDEAP
FVVKNRLGLTVSVVHSELFSPLGREVTARRVELQNGESLNMDYRRTTTHSDQFSAMTSLV
AKDYYIQPTPVGHTSTGMIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSP
FQIINHFSIPFRVMEGSTCLGISLPTEEFCVPLDSYRSELRLQPVTEGDDQYDCSEGFSY
ELVSQQPGARVQQTCHRHGDSAGVLMVNIVPLKDTVTSQHTGMAGEHFDEPYILHLWPSV
LLRNLLPYPITYHLQDSEEPTPITLMDGHSAQLHTAIMDQSSLELRLLDYLGQDWQAHYG
LCGDLDEITFIVFSSLRVEEEVVRLGEGGEGKRAELDIAVHVKYDAGQTEVAIHSPYWMV
NKTGRLLQYKADDIHRKHAMDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVG
SYGEVKCKGRLKDYVIGVKIDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEA
RPQQAAIPFWPERDSKKLKVKVEGSRSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSD
HSIIIRFSDYHDGAAPFLIINHTQEQTVEFYQRFRRDSSEWVADELLGLSFSVEETQPSS
QKEKDKLSPGKAMYYTWAEPSGSRSLAWQCGSYSGELKSEEDLRLDVNEEGKLYLISFYE
GLQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGISLVNNSSRQEVSFIGITSSD
VVWESKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNAILDLENNFQVSLTHNGQDMR
MMQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKS
VTMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLGFLYAVLDLFTPENAS
VMTSEQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIKLHLSFSLSSGGEDGN
KEKRETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAYFQLTFQFRTRQQLQWEVIRHYSK
QAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALV
GGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSG
FVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAET
SQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYRYFAHAKVNESDFLMI
TKRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKERVKSVFHAKEFGKII
NFRSPEIAKWVLTKLEDARESLHKY
NT seq
9798 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacactggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgcc
gagaaggaggagaaacagctccaggaggctcgccagagggagctgcagaggatcgaagag
accaaacagaaagcagcggaacaagataaccctgcacttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaggatgatgtcacgaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaacgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgcgatgcctccaggacagcatcccg
gggggttccactcccatgaaccacgatttcatttttcgaccgataacggctgatgcgaag
ctgcgcatgaacccccggtcagatgtggacttctcctctcccaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctggggtcagtggatatgatgtcacgcaacctgccctacaggaaataccggccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgatcacaggcatcatggaggtg
gacgtgaaaccgcggctgcacatgtggtcatggcagcacatccgctgccaccggcagaca
gtcaagcactacagagagctctacaaggccaagatcaccagcaagaagcccactgagaag
cagctcagggaattggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcgggtctgcgtatcttccgtccgggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtctggctggtcagga
gacggtggcgccgaggccaaggaggtcaagaccggagcttttgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcggctacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctcg
atgaaagacaacaaggaccagaatgaaatcctcaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagctcagtctgttt
gaggtgacaggactagccaataaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacccccttgttggacatcctgtttgagaccaaccctctggacgag
agcgctgatcagcggcttcgcgtcgagtcccagcctctggagatcatctatgatgctgtg
acggtgaacagcatgtctgcgttcttctcgccccctgatgacctccagctagacgagctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgttccccaaaccggcttctacgactccacccagaacctcatgctattggacctgggt
cacttcaaggtgtctagtctgagcagagaggggctgccgcagctctctgtagggagaagt
actatagaggatattatgtcccgggcctacgacagcttcgacgtccagctcagcagccta
cagttcctctacagcaaaccagatggggactggaagaaagcccgtaagctgaggcagtcg
gccctccacatcctggagcctgtcgacgtcaaggtggtgttcagcagagccatggtggtc
acagactcacgcatgcccaagtttaaaatctccggggagctacccctcctgtctctgagg
atctctgatgataaggtacgtggcgtgctggagctgatcgacagcatcccgctgccagag
agcaggccggccccgcgcaacaccaacgctcactcaacatccaaggctttaaagcagtcg
tacacccctcagctgacccccaggaaaccaaccatggctgaattgcgcaactccctcata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccgttcttccccgacaacatgcccagccccttgcagcgctccgactcggtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgaccgagttcctcatgacgtttgag
atcagcaaactgtccgttcagctgtgtcgtctgtctggaggcgaggaggtcacagtgttg
cacctggacatcgaggggctgggcaccgagctgaagctgcgtaccttcgacatgacatcc
tacacgttcctacgagagatctgcctggagtgccctgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtac
actaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctcctccccccgaccaaggaggtggcgcccagccaggaggag
ctgcccaccatccccgaggaggacgagggagagggggaggaaggcgagaagaaagaggaa
tcggccgtggcaaaaaaaacttcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccgcaggata
gcagagattcgcatcgagggcctggtgtcggaggtgctgatgaggaaaaaggcggtagag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggctttgtacaag
cagtgtgtgtccatagccgatgaggaggtgtttgctttccgcatggtgaaccacacggaa
gccacggagggcgacgcctatctagacatgggtaaagtggacaccagcatcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgactgtgcaggcagcggagaag
gcggccaccggggtgatggagctggctgagcgcagcacccgcatctccctggacgtggac
ttcaacgctcctgtcgtcttcctgccgcagtcgtcgtcctccgccaacgtcatcgtggcc
gaccttggtatggtcacggtcaagaaccgcttcgccatggtcccctcccagatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaggaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgatatagag
atcactgctcacctcaaaccaatgaacctgatcctgggtcaggatgacatgacggtggtg
ttgaggactctgagtgggaacctgtcagagacgtcagacgctgcttccccccctcctcct
cctcctccgcgtacagtggaccgctccgacacggcctctaccaaaggctcacaggcatca
ggaggtactggtactaaccccaccagcggcaacacggtggtaactgctgcagtggtggag
acccagaagagcaccaagctgaagagcacactcaaacttgacttcaagtttgactccatg
accctggtcctgtacagccccaatgggactgaggtgcaggtgttggacttgagggatgag
caactgaagctggctgagttcaccctggggactatctctacatctgtccatatgttctca
gacggatccatgaaggcctccgtcaaactcacagactgcctgctagacgacaaaagatgc
cgagtcaagaagatcactgccaggatgatggcgatgcgtccggacgctgagaggaatgtg
atggtggaggtgaactacaagcagggccgcgatggcacctctttcgacacggtggtgcag
gacgtgtacctctgtgccagcatggagttcctgctcactgtggccgacatcttcctcaaa
gccagccagcagggcttctcctccgccacccccaagaacagcagtagcactaaacccact
gcagccgcagcctccaaggaatctgctccggtggtggtggcaaagtccgagattaatgtt
ctggtgaagaaccccgagatcgtgtttgtggccgacctgacacgtgccgacgccccggcc
ctggtaatgaccacggagtgcgagctggtgatgaagagtgacccggacggtcagctgatg
acagcggtggtcaaggacctgaaggtggtggcctgccccttcctgaaggagaagaggaac
aaagagaccactgtgctgcagccctgccaagtgttcttcaagagcacacagtcctccacc
tccccgcaggccatggaagtctgcatcaacgcactcacactcaaggtgtcgcccatcatt
atcaacacagtgattaccattcagtcggtgctgagcccggccggtgccgagacaccccag
tctgagctggagagccccgtgcccccagacctgtgggagcgccggtcctggcgggacctc
aagctgtggttcctggaggaggagggtaaagacgaggatgcccagtccctggtcccgctg
attccccagggtgagtccctgcagttggccatcaactccatctgcctgaccctggaggca
ggggtgggccaccgcaccgtccccatgctcctagcaaagtcctccttccacggtgacgtc
aagaactggagtaccctcatcaacctgcacagccagctcaacctggaggttcactacttc
aacgaggtgatgggggtgtgggagccactgctggagcccctagaagacgagacccgagac
ggcttcagaccctggaccctgggattaaagatgaagaaaaagccagtgaagtacacaggt
atatcagaagatgtggactacagcatccctgactacaagaccgtgatcagcatcagcagc
aaggaccaacttaacatcaccctctccaagtgtggactgggcatgctcagtaacctgggc
acggcctttgcggaggcggccaagcaggcatcggatagtttccagaaggacgaggctccg
ttcgtggtgaagaaccgtctaggtctgactgtgtcggtggtgcacagtgagctgttcagc
cccctgggccgtgaggtcacagcgcgccgggtagagctgcagaacggagagagcctcaac
atggactaccgtcgcaccaccacccactcagaccagttctctgccatgacttcgttggtg
gccaaggactactacatacagcccactccggtgggccacacttcaacaggcatgattccg
ttgatcaaagtggggcgtggcatgtacagtgtcatgcacaaagactccggtgtcacccgt
ttcctggtctgtcagatctactctgtggagggaagcaagtacatcaagatccgctctccc
ttccagatcataaaccacttctccatcccattcagagtgatggagggctccacctgtctg
gggatctcactgcctacagaggagttctgtgtgcctctggactcttacaggtcagagcta
agactgcagccggtaaccgagggagacgatcagtacgactgctccgagggtttcagctac
gagttggtgagccagcagcccggtgcacgtgtgcagcagacctgtcatcgccatggcgac
agcgctggcgtcctcatggtcaacatcgtccctctgaaagacacggtgacgtcccaacac
acgggaatggccggggagcactttgacgagccctacatcctgcacctgtggccctccgtc
ctgctccggaaccttctgccttaccccatcacctatcacctacaggacagtgaagagccc
acccccatcaccctgatggacggccactcggcccagctgcacaccgccatcatggaccag
tccagcctggaactccgcctcctcgactacctggggcaggattggcaggcccactacggt
ctctgtggcgacctggacgagatcaccttcattgtgttcagctccctgcgcgttgaagag
gaggtggtcaggttaggagaggggggagaagggaagagggctgagctggatattgcggtg
catgtgaagtacgacgcaggccagactgaggtggccatccattctccctactggatggtg
aacaagacgggccgcctgctgcaatacaaggccgacgacatccaccgcaaacacgccatg
gactacgacatgcctctgctcttctccttcaagccacacaactttctgcagaacaacaag
gtgcggctgatgatctcggacagcgacctgtcggatgatttctccctggataccgtgggt
agttatggtgaagtgaagtgcaaagggaggcttaaagattacgtgatcggagtgaagatc
gacgccagcagtttcagcctgacccgtatcgtaagctttgtgccgtactacctgttagtg
aacaggaccaaacatgtaatctgggtgggagaggagggccaggacgactggaccgaggcc
agaccacaacaggcagccatcccgttttggcctgagagggactccaagaagctcaaagtc
aaagtagaaggcagtcggtcaactcctcaaaccatggacttcaccaaaccggaaaactgc
ctgctgctgcacctggacaacactctgggcggggtcattgtggatgtgaacctatcagac
cactcgattatcatccgtttctctgactaccacgacggggccgcccccttcctcatcatc
aaccacacccaggagcagacagtggagttctaccagagatttcggagagattcatcagaa
tgggtggcagacgagctgctcggcctctccttctcagtagaggagacccagcccagtagt
cagaaggagaaggacaagctaagccccgggaaggcaatgtactacacctgggctgagccc
tctgggtcgcgctccctggcctggcagtgtggcagctacagcggcgagctgaagagcgaa
gaggacctgcggttggacgtgaacgaggagggtaagctgtacctcatctcgttctacgag
gggctccagcgggtggcgctgttcaccgaggacagacgcatatacaagctgctgtgtgag
agtgagaaggccgagctggccgaacaggagatcatcctgtccctgcaagacgtgggcatc
tccctggtcaacaacagcagccgccaggaggtgtccttcatcggtattaccagttcagac
gtggtgtgggagtccaagccaaagaagaagtctcgctggaaacccctgagtggaaaagat
gccgagctgctggagacccacttcaaggagtacacagagagtggaccagtggacaacgcc
atcttagacctggagaacaacttccaggtgtctctgacgcataatgggcaagacatgagg
atgatgcagccatatgacgctccaatcaggaggagcttcctgccaggggtgaaggtggag
tacagcgtatcggcccgccagagtgcctaccgtgtccagatcaaccgcatacagatccag
aatcagctacctggagcaatcttcccatatgtcttctaccctataaaactacctaagtct
gtcaccatggactcagagcctaaacctctgaccgacatcagcattgttaccagggcagcc
gggcactctgatatctcacgcatcaagtatttcaaggtgctaatccaggagatggatctg
aagttggacctgggcttcctctatgccgtcttggatctgttcactccggagaacgccagc
gtgatgacgtcagagcagcaggtggagttgtttgagaaggacatagagtatttgaagaca
gagctcaacgacgtctcagccactgacacgtcccctatcagtctctatgagtacttccac
atctctcctatcaagctgcacctgagtttctctctgagttctggtggagaggatggtaac
aaggagaagagggagaccgagatcatccctgtccagtccctcaatctgctgctgaaaagc
atcggagcaaccctcactgacgtgcaggatgtcgtcttcaaattggcctatttccagctg
accttccagtttcgcactcgccagcaactacaatgggaggtcatcagacactactcgaaa
caggcgataaagcagatgtatgtgctggtgttgggcttggacgtgctgggaaaccccttt
ggactgatccgaggtctgtcggagggagtggaggctttcttctacgagccctatcaggga
gctatccaggggccagaggagtttgtggagggtatggcgctgggggtgaaagcgctggtt
ggaggagcagtaggtggcattgcgggcgctgcctccaggatcacaggcgccatggcgaag
ggtgtggctgccatgacgatggacgaggagtaccagcagaagagacgggaggccatgaac
aagcagcctagcggtctgagagagggcctgacccgcggaggcaaaggactggtctctggc
tttgtcagtgggatcacagggattgtcaccaagcccattaaaggtgctcagaaggagggc
gcggcgggcttctttaagggtgtgggcaaggggctagtcggtgctgtggccagacccact
ggaggcatcatcgacatggccagcagcaccttccagggcatcaagagggcggctgagacg
tcccaagatgtggagagtctgcgtccgcctcgcttcatccacgaggacggggtcatccga
ccatacaaggaaagagagggcatcggcagccagatgctacagaaaattgaaaatggaagg
ttcgccaagtacagatactttgcgcacgccaaagtgaacgagtccgatttcctgatgatc
accaaaaggggaatctttttcgtgaccaaaggtacatttgggcagctgacctgcgagtgg
cagtatctgttcgacgagttcaccaaggagcccatgatcgtggaggggaggcggcttcgg
atcgaggccaaggagagagtgaagtctgtgtttcatgccaaagagtttgggaagattata
aacttcagaagtccagaaatagccaagtgggttcttaccaagcttgaagacgccagggag
agtctacacaaatactga
DBGET
integrated database retrieval system
