Salmo salar (Atlantic salmon): 106580423
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Entry
106580423 CDS
T04363
Name
(RefSeq) clathrin heavy chain 1-like
KO
K04646
clathrin heavy chain
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04142
Lysosome
sasa04144
Endocytosis
sasa05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
106580423
04142 Lysosome
106580423
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
106580423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106580423
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106580423
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
106580423
Exosome [BR:
sasa04147
]
Exosomal proteins
Proteins found in most exosomes
106580423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
capSnatchArena
IFS
Motif
Other DBs
NCBI-GeneID:
106580423
NCBI-ProteinID:
XP_014016940
UniProt:
A0A1S3NNW9
LinkDB
All DBs
Position
ssa20:complement(29925333..29953389)
Genome browser
AA seq
1670 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIIDMADPNN
PSRRPISADSAIMNPTSKVIALKEDAAKCLQIFNIEMKSKMKAHTMTEDVMFWKWISVNT
VALVTEAAVYHWSMEGDSQPIKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVV
GAMQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKASTLFCFAVRSQAGGKMHIIEVGHPAT
GNQPFTKKAVDVFFPPEAQTDFPVAMQIGTKHGVIYLITKYGYIHLYDLESGVCIYMNRI
SAETIFVTAPHEPTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLGLRMAMRSNLA
GADELFARKFNTLFAQGSYSEAAKVAASTPKGILRTAETIRKFQSVPGQPGQASPLLQYF
GILLDEGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECCEELGDLVKAVDPTLALSV
YLRANVPSKVIQCFAETGQFQKIVLYAKKVGYSPDWVFLLRNVMRVSPDQGLQFSQMLVA
DEEPLANINQIVDVFMEGSLIQQCTSFLLDALKNNQPAEGHLQTRLLEMNLLHAPQVADA
ILGNQMFTHYDRAHIAQLCEKAGLLQRALEHYTDLFDIKRTLVHTHLLNPEWLVNFFGAL
SVEDSIECLRAMLSANIRQNLQLCVQVASKYHEQLGTNALVDLFESFKSFEGVFYFLGSI
VNFSQDPDVHFKYIQAACKTGQIKEVDRICRESNCYDPDRVKNFLKEAKLTDQLPLIIVC
DRFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRG
QFSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLKENT
FYDSTVVGKYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWAN
VLEENNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF
SEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFKKFDVN
TSAIQVLIEHISNLDRAYEFAERCNEAAVWSQLARAQLQRDLVKEAIDSYIKADDPSAYM
EVVSAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTGRLAELDEFVSGPNNAHI
QQVGDRCFEEGMNDAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCF
ACVAGEEFRLAQICGLHIVIHADELEELISDYQDRGYYEELIALLEAALGLERAHMGMFT
ELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEYDNAVLTM
MSHPTDAWKEVQFKDIIAKVANVELYYKSLSFYLDYKPLLSNDLLTILSPRLDHSRAVTY
FTKMKQLKLVKPYLRSVQSHNNKGINEALNNLLTEEEDYQGLRASIDAYGNFDTVVLAQR
LEKHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFL
EEGRKECFAACLFASYDLLHPDVVLELAWRHNIMDFAMPYFIQVMREYLTKVSPAANTAS
PGCVPNGTLFPIYCTAFEQNPMSPGQISALYREWGTIWGTHICFQWVKML
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatactgccgatacgatttcaggaacatctgcagctgcagaacctgggggtg
aatccggccaacatcgggttcagctacctgaccatggagtctgacaagttcatctgcatc
cgggagaaggtgggtgagcaaaaccaggtggtgatcatagacatggctgaccccaataac
cccagcaggcgacccatttccgctgacagcgccatcatgaaccctacaagcaaggtcatt
gccctgaaagaggacgctgctaagtgcctgcagatcttcaacattgagatgaagagtaag
atgaaggctcacaccatgacagaggatgtcatgttctggaagtggatctctgtcaacact
gtcgccttggtgactgaagcggccgtctaccattggagcatggagggggactctcagcca
atcaaagtgtttgatcggcacgccagtctggctggttgccagatcataaactacagaaca
gacgaacagcagaagtggcttctgcttatcgggatctcggcacagcaaaaccgtgtggtg
ggggccatgcagctgtactccgtggacaggaaggtgtcccagcccatcgagggacatgct
gcagccttcggagagtttaaggtggagggcaacaccaaagcctctactctcttctgcttt
gctgtgcgcagccaggctggtggcaagatgcatatcatagaggtgggtcatccggctaca
gggaaccagccatttaccaagaaggcggttgatgtgttcttccctcccgaggcgcagaca
gacttccccgtcgccatgcagattggcactaagcatggcgtgatctacctgatcactaag
tatggctacatccacctgtatgatctggagtcaggagtgtgtatctatatgaaccgcatc
agcgctgagaccatcttcgtcactgccccccacgaacccacctccggcatcattggggtt
aacaagaagggacaggtgttgtcagtgtgtgtggaggaggagaacatagtgaactatgcc
accaacgtgctgcagaacccagacctgggcctgaggatggccatgcgttctaacctggcc
ggagcagatgagttgtttgccaggaagttcaacacgctgttcgcccagggctcctactcc
gaggctgccaaggtggctgcctccacaccaaagggtatcctgcgtacagcggagaccatc
cgtaaattccagagtgtgccaggccagccaggccaggcctctcccctgcttcagtacttt
ggcatcctgctggacgaaggccagctcaacaagtttgagtctctggagctgtgcaggccc
gtgctacagcagggacgcaagcagctgctggagaagtggctgaaagaggacaagctggag
tgttgtgaggagcttggtgacctggttaaggcagtagatcctactctggccctcagcgtc
tacctcagggccaacgtacccagcaaggtgatccagtgcttcgctgagaccggacagttc
cagaagatagtgctttacgccaagaaggtgggctactctccagactgggtgtttctgttg
aggaatgtgatgcgggtcagcccagaccagggtctacagttctctcagatgctggttgca
gatgaggagcccctggccaacatcaaccagatagtggatgtgttcatggagggcagtctg
atccagcagtgcacctcattcctattggacgctctgaagaacaaccagccagccgaggga
cacctacagacacgcctcctggaaatgaacctcctccatgctccccaggtggctgatgca
atcctgggaaaccagatgtttactcactatgaccgagcccacatcgcccagctgtgtgag
aaggctgggctgctgcagagggctctagaacactacactgacctgttcgacatcaaaagg
actctcgtacacacacacctgctcaaccctgagtggctggtgaacttctttggcgccctg
tcagtagaggactctatagagtgtcttcgggccatgttatcagccaacatccgacagaac
cttcagctgtgtgtccaggtggcgtctaaataccatgagcagctgggaacaaatgccctg
gtggatctcttcgagtccttcaagagctttgagggtgtgttctacttcctgggttccata
gtgaacttcagccaggaccctgacgtccattttaaatacatccaggcggcctgtaagacc
ggacagatcaaggaggtggatcgcatctgtagagagagcaactgttatgacccggacagg
gtcaagaacttcctcaaggaggctaaactgacagaccagctgcctctgatcatagtgtgt
gaccgctttgactttgtccatgacctggttctctacctctaccgcaacactctgcagaag
tacattgagatctatgttcaaaaggtcaaccctagccggctgccggtggtgataggaggt
ctgttggatgtagactgtgctgaagatgtcattaagaacctgatcatggtggtgagagga
cagttctccacagacgagctggtggcagaggtggagaagaggaacagactgaagctgttg
ttgccgtggctggagtctcgtatccacgagggctgtgaggagccggctacccacaatgcc
ttggctaagatctacatagacagtaacaacaacccggagcgcttcctgaaggagaacacc
ttctacgacagcactgtagtggggaagtattgtgagaagagagacccccacctcgcctgt
gtcgcctacgagaggggccagtgtgacctggaccttatcaaggtgtgcaatgagaactcc
ctgttcaagagtgaggctcgctacctggtcagacggaaagacccagaactatgggccaat
gttctagaggagaacaacccttttagacgccaactcatagaccaggtggtgcagacagct
ctatcagagacccaggacccagaggaggtgtcggtgacagtcaaggcctttatgacagct
gacctgcccaatgagctcattgaactactggagaagatcgtactggacaactcagtcttc
agcgagcaccgaaacctccagaacctgttgattctgacggccatcaaggcagaccggacg
cgtgtgatggagtacatcaaccgcctagacaactacgacgccccagatatcgctaacatc
gccatcagcaacgagctctttgaggaggccttcgccatcttcaaaaagtttgacgtcaac
acctctgccattcaggttctgatcgagcatatcagtaacctggacagagcctatgagttt
gcagagcgttgtaatgaggctgctgtatggagtcagctggccagagcccagctccagaga
gacctggttaaagaggccatcgactcctacatcaaagctgacgacccgtcagcctacatg
gaggtggtcagcgcggccagcaagaacaataactgggaggatctggtgaagttccttcag
atggctcgtaagaaggcccgggagtcgtacgtagagacagaactcatctttgctctggct
aaaactggcagactggccgaactagatgagtttgttagcggccctaacaatgcccatata
caacaggtgggagataggtgttttgaggagggcatgaatgatgctgctaagctgctgtat
aataatgtgtccaactttgcccgcctggcgtccacgctggtacacctaggagagtaccag
gctgctgtggacagcgccaggaaagccaacagcacacgcacctggaaggaggtgtgtttt
gcgtgtgtggctggggaggagtttcggttggctcagatctgtggtcttcacatcgtcatc
cacgctgatgaactggaggagctcatcagtgactatcaggaccggggctactatgaggag
ctgatagccctgttggaggcagcattgggtttggagcgtgctcacatgggcatgttcaca
gagctggccatcctctactccaaattcaaaccccagaagatgagagaacatctggaactc
ttctggtcccgtgtcaacatccctaaggtgctgcgagcggcggagcagtcccacctgtgg
gcggagctagtgtttctgtatgataaatacgaggagtatgacaatgctgtcctcacgatg
atgtcacaccctactgacgcatggaaggaggtgcagttcaaggacatcatcgccaaggtg
gccaatgtggagctgtactacaaatccctttccttttacctggattacaaacctctgctg
tcaaacgaccttctgaccatattgtcaccacggttagaccacagccgggcggtcacatac
ttcaccaagatgaagcagttgaagttggtaaagccttacctgcggtcagtccagagtcac
aacaacaagggaatcaacgaggccctcaataacctactgacagaggaggaggactaccag
ggtctgagggcatcgatcgacgcctatggtaactttgacaccgttgttctggcccagaga
ctggagaagcatgagttgattgagttcagacgcatagcagcatacctctacaaaggcaac
aaccgctggagacagagcgtggaactctgcaagaaggacaaattatacaaggatgcaatg
ctgtatgctgccgagtctaaggatgcagagctggctgagaccctgctgcagtggttcctg
gaggagggcaggaaggagtgtttcgctgcctgtctgtttgcctcctatgacctgctgcac
cctgacgtggtgctggagctggcctggagacacaacatcatggactttgccatgccatac
ttcatccaggtcatgagggagtatctcaccaaggtcagtcctgcagcaaacacagcaagc
ccagggtgtgtcccaaatggcaccctgtttcctatatactgcactgcttttgaacagaac
cctatgagccctggtcaaattagtgcactatatagagaatggggtaccatttgggggaca
cacatttgttttcagtgggtgaaaatgttgtaa
DBGET
integrated database retrieval system
