Salmo salar (Atlantic salmon): 106580591
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Entry
106580591 CDS
T04363
Symbol
ercc8
Name
(RefSeq) ERCC excision repair 8, CSA ubiquitin ligase complex subunit
KO
K10570
DNA excision repair protein ERCC-8
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03420
Nucleotide excision repair
sasa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
106580591 (ercc8)
09124 Replication and repair
03420 Nucleotide excision repair
106580591 (ercc8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106580591 (ercc8)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106580591 (ercc8)
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
106580591 (ercc8)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
106580591 (ercc8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WDR55
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
WD_LRWD1
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_HPS5
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
106580591
NCBI-ProteinID:
XP_014017305
UniProt:
A0A1S3NPY6
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Position
ssa20:37282581..37298573
Genome browser
AA seq
399 aa
AA seq
DB search
MLGFLTARQAGLDDPLRLRRAESTRRVLNLELNHDRDVDRIHSNGINTIDIEVIEGRYML
SGGADGVIVVYDLENNSRKPQYTCKAVCTVGRSSPYVHRFSVETVQWYPHDTGMFVSSSF
DKTMKVWDTETLKPAEVFQFEGNVYCHHMSPIARKHSLIAVGTKDQKVQLCDLKSGSRIQ
VLQGHRGEVLSVRWSPRYEHILATASTDSRVLVWDVRRASGSLFSLDQHNGDKSKASSEA
VNTAHNGRVNGLCFTVDGLYLLTTGTDDRMRLWNSANGKNTLVNYGKVSNESRKGLKITV
SRSCSPEFVFVPCGSSVAVYTLHTGELVTMLRGHYNNVDCCQFHPDYQELYSGGKDCNIL
AWVPVVRPPDVEEEGTAAKGGSQATVNPAFEDAWSSDED
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgttgggttttctaacagcaagacaggctggacttgacgacccacttcgtctgagacgg
gcagagtcaacacggagggtcctcaatttagagctgaatcatgacagagatgtggatcga
atccatagcaacggcataaacaccatagacatcgaagtcattgagggcagatacatgcta
tctggaggggcagatggggtgattgtggtgtatgacctggagaacaacagcaggaaaccc
caatacacctgtaaagcagtctgcactgtaggcaggtccagtccgtatgtccacaggttc
agtgtagagacagtgcaatggtacccacacgacacaggcatgtttgtctccagctccttt
gacaaaaccatgaaggtctgggacactgagacactaaagcccgctgaagtgttccagttt
gaaggaaacgtctactgtcaccacatgtcccccattgccaggaaacacagcctcatcgca
gtgggtaccaaagaccagaaagtacagctctgtgacctgaagtctggctcacgcatccag
gttctgcagggtcacagaggtgaggtcctatctgttcggtggtcgccaagatatgagcac
attttagctacagccagtactgacagcagggtgttggtgtgggatgtgcgtcgggcctca
gggagcctgttctctctggaccaacacaacggggacaagtccaaggcctcgtcagaggca
gtgaacacagcccataatggaagggtaaatggcctctgcttcacggtcgacggcctctac
cttctcaccacgggaacagacgaccgcatgaggctgtggaacagtgccaatggaaaaaac
acactggtgaattatgggaaggtgagtaacgaaagccgtaaggggttaaagatcacggtt
tctcgtagctgcagcccggagtttgtgtttgtaccttgtggcagctcggtggcggtgtac
actctacacacgggggaacttgtaaccatgctgaggggacactacaacaacgtggactgc
tgccagttccaccccgactaccaggagctatacagcggtggtaaagactgtaacatccta
gcctgggttcctgttgtacgaccaccagacgtggaagaagaagggacagccgccaagggt
gggagccaggctacggtgaaccctgcttttgaagacgcatggagcagtgatgaggactga
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