Salmo salar (Atlantic salmon): 106580642
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Entry
106580642 CDS
T04363
Symbol
HMGB1
Name
(RefSeq) high mobility group-T protein-like
KO
K10802
high mobility group protein B1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03410
Base excision repair
sasa04140
Autophagy - animal
sasa04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106580642 (HMGB1)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
106580642 (HMGB1)
09143 Cell growth and death
04217 Necroptosis
106580642 (HMGB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sasa03036
]
106580642 (HMGB1)
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106580642 (HMGB1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sasa04147
]
106580642 (HMGB1)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
106580642 (HMGB1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
106580642 (HMGB1)
MMR (mismatch excision repair)
Other MMR factors
106580642 (HMGB1)
Exosome [BR:
sasa04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
106580642 (HMGB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_box_5
Motif
Other DBs
NCBI-GeneID:
106580642
NCBI-ProteinID:
XP_014017394
UniProt:
B9EQ25
LinkDB
All DBs
Position
ssa20:41827495..41830292
Genome browser
AA seq
196 aa
AA seq
DB search
MGKDPRKPRGKMSSYAYFVQTCRAEHKKKHPEASVNFAEFSKKCSERWKPMSPKEKGKFE
DMAKQDKVRYEREMKNYIPPNGQKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS
IGDTAKKLGVMWNSSAAEEKKPYEKKAATLKEKYDKDIASYRTNGRVDTASSAAADDDDE
EEDDEEEDDDDEDDDE
NT seq
591 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatcctaggaaaccgagaggcaagatgtcgtcatatgcgtacttcgtgcag
acctgcagggcagagcacaagaagaaacaccctgaagccagtgtcaactttgctgagttc
tccaagaaatgctcagagcgatggaagcccatgtctcctaaagaaaaaggcaagtttgaa
gacatggcgaagcaagacaaggtccgctacgagagagaaatgaagaactacatcccaccc
aatggccagaaaaagaagaggttcaaggatcctaatgcccccaagagaccaccgtctgca
ttcttcatcttctgtgctgacttccgggccaagataaagagcgagcacccaggcctgtcc
attggagacactgctaagaagctgggagtgatgtggaacagctctgcagctgaggagaag
aagccgtacgagaagaaggcagccacgctgaaggagaaatacgacaaggatatcgcctca
taccgcaccaatggtagagtggatacggcctcctccgcagctgctgacgacgacgacgaa
gaggaggatgatgaggaagaggatgatgacgatgaggatgatgacgagtag
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integrated database retrieval system
