Salmo salar (Atlantic salmon): 106580998
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Entry
106580998 CDS
T04363
Symbol
brip1
Name
(RefSeq) BRCA1 interacting protein C-terminal helicase 1
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
sasa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106580998 (brip1)
03460 Fanconi anemia pathway
106580998 (brip1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106580998 (brip1)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
106580998 (brip1)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
106580998 (brip1)
FA (Fanconi anemia) pathway
Downstream FA components
106580998 (brip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
Motif
Other DBs
NCBI-GeneID:
106580998
NCBI-ProteinID:
XP_014018113
UniProt:
A0A1S3NRR4
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Position
ssa20:55310412..55345333
Genome browser
AA seq
1355 aa
AA seq
DB search
MAAPPVEYTIGGVKIQFPCKAYPSQLAMMNSIVRGLNHGQHCLLESPTGSGKSLALLCSA
LAWQQAQYGKLEQDGSSPTEGKKQAVTIPCQCACHSKPAIVPDNRPKALATVVVDLTGSP
EVVVAQRSSSPTDPVCSVPPPPEEYKPKSLASRLSDKIQTSLTSEDDDFQPDRKRIRTPA
MEQKGRKRRCLEQGVVFIDDEPEGERPVPGAQTWTVELSTQAQTIDLPLDRNCCSPVVSC
SLCPCASSKGGQNGAAGKSSKEKDKEGKEKDKEGKKKQVPKIFFGTRTHKQITQIAHEMK
RTLYSSAPMTILSSRDHTCVHPEVVPHSNRNERCKELLEAKNGVSCRFKNGVHKMQDQNT
LQWVHGLHQAWDIEDLVRLGGRLRACSYYAARDLMQEACIVFCPYNYLLDPLIRESMQIN
LKGQIVVLDEAHNIEDCARESASYTLNKPQLLSAREELDGMVTHNIRRSNHEPLRAFCCS
LLNWMQESCSVLAEREYEMSCKVWNGKEVLGLFHTMGITADTFAMLQKHLAAVLEKEERV
GLVNGREDTVEVPTISSASSSVLKSLFMVLDFLYRDKSRFAEDYRVALQQSYTWTTAPDV
PDVQGFFARPNRRRHSAKTKTLVHTLSFWCLNPAVAFSDLSDSVHSIVLTSGTLSPMGSF
SSELGVKFSIQLEASHVISKSQVWVGTLGSGPQGRKLCATFQHAETYAFQDEVGALLLRV
CQAVGRGVLCFLPSYKMLDKLRDRWTNTGLWEKLEERKTVITEPRGGGKGDFDELLQMYY
DAIRISGEFAGDRDGALLMAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMK
YNDQHCKARGLLSGSRWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFGNNPNKYISG
LSKWVRNLVRHHDTFSGAMQSLVAFSQCQQGAGETHGAGSQTFNSTTVLSPASQSSVTVE
DLSHCRPSPSPSSDCLLWATVHHTTTSQVPEPHTQLQGFRSWVPPTVSVPPALWPLPTTS
TGKSGNRGDQKQTQQHPSTHPNSDPKAPPPNISTSLHHLFTSTPVSSTHFKTPIFQAQNP
STHQDHLDDPPRPDSVEEEEKKKNQENVSQDPWNPFPGGMAREGLDGPASTPPSQDQGPV
LDLSPVEVPASCEPRQTTVVVDDPTLLEEEEDQSIFFTPEMFDDEEEVVDTKPLPRTVQG
MMTGEGTVLASSLALSTGTAQALSEDLFAPEEGPREGTETVTTTDTKRGGTLAPSASRDC
VSVGWEQDRQQGSRIGSGDEVQQTQRQEDQGQGEGQGANQGANQGATQGATQGQSRQTGS
RTHRLSRSRQKAPEPSSGKLTSYFFVVPQVITIDN
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcccccagtggagtacaccataggaggggtgaagatacagttcccttgcaaa
gcctacccctcgcagctggccatgatgaactctatagtgcgagggctgaatcatgggcag
cactgtctattggagagccctacagggagtggcaagagcctagccctgctctgctctgcc
ctggcctggcagcaggcacaatatggtaagcttgaacaggacggcagcagtcctacagag
ggtaagaagcaagctgtcacaatcccctgtcagtgtgcctgtcatagcaaacccgccatt
gtcccagacaacaggcccaaagcactagccactgtggtggtggacctcacaggctcaccg
gaggtagtggtggcacagcgctcatcttcacccacagacccagtctgttcagtgccccct
ccaccagaagagtacaagcccaagtctctagcctctcgtctgtctgacaagatccagacc
tccctcacctccgaggatgatgacttccagcctgataggaaacgcatccgcacccctgct
atggagcagaagggtcgtaagaggaggtgcttggagcagggagtggtgtttatagatgat
gagccagaaggagagaggccagtgcctggagcacagacctggactgtggagctgagtacc
caggcacagactatagacctgccccttgatagaaactgctgttcccccgtggtgtcctgc
tctctctgtccctgtgcctcgtccaaaggcggccagaatggtgccgcggggaagtcttca
aaggagaaggacaaagagggcaaggagaaggacaaagagggcaagaagaaacaagtcccc
aagatcttctttggcacgcgcactcacaaacagatcactcagatcgcccacgagatgaag
cgtacgctctactcctccgcccccatgaccatcctgtccagtagggaccacacctgtgtt
cacccagaggtggtgcctcattccaaccgcaacgaacgctgcaaggaactgctggaagcc
aagaatggcgtgtcgtgccgcttcaaaaacggcgtgcacaagatgcaggaccagaacact
ctgcagtgggtccatggtctccaccaggcctgggacatagaggacctggttcggctgggg
ggccggctgagggcctgctcctactacgctgccagggacctcatgcaggaagcctgtatc
gtcttctgtccctacaactacctactggaccccctcatcagggagagcatgcagatcaac
ctgaagggtcagatcgtggttctggatgaggcccacaacatagaggactgtgccagggag
agtgccagctacaccctgaacaaaccccagctgctgtctgccagggaggagctggacggc
atggtgacccataacatcagacgctccaaccacgaacccctacgtgccttctgctgctcc
ctgctcaactggatgcaggagagctgcagtgtgctggctgaaagggagtatgagatgtct
tgtaaggtgtggaacggcaaggaggttctgggactcttccacaccatgggcatcactgct
gacacttttgccatgctgcagaaacacctggcagcggtgttggagaaggaggagcgagtt
gggctggtgaacgggagagaggacacagtggaggtccccaccatcagctcagccagctcc
tctgtcctcaagagtctcttcatggtgctggacttcctctacagggacaagagcaggttt
gcagaggactaccgtgtggcgctgcagcagtcctacacctggaccactgctccagacgtg
ccagatgttcagggcttcttcgccaggcccaaccgccgacgccacagtgccaagaccaag
accctcgtacacacactcagtttctggtgcctcaaccctgccgtggcgttctcagacctt
tcggacagtgttcacagcatcgtgctgacctcaggcacattgtctcctatgggatccttc
tcttcagagctgggggtcaagttctctatccagctggaggccagccacgtcatcagcaag
tcacaggtgtgggtgggtacgctgggctctggcccccaggggaggaagctgtgtgccacc
ttccagcacgctgagacctatgccttccaggatgaggtgggagccttgctgctcagggtc
tgccaggccgttggaaggggagtgctctgctttttgccctcctacaagatgctggacaag
ctgcgtgaccgctggaccaacacagggctgtgggagaagctggaggagaggaagacagtg
atcacagagcctagaggaggagggaagggagactttgatgagctgctgcagatgtactat
gatgccatcagaatcagtggagagtttgcaggggacagagatggagctctactgatggca
gtgtgtagagggaaggtgagtgaaggactggacttcacagacgacaacgccagagcagtg
gtcaccatcggcatccccttccccaacatcaaggacctgcaggtggagctgaagatgaag
tataatgaccagcactgtaaagccaggggtctgctgtcaggctcccgctggtatgagatc
caggcctacagagccctcaaccaggccctgggcaggtgtatcagacacaagaatgactgg
ggagccctcattctggtagacgacaggtttgggaacaaccccaacaaatacatctcaggt
ctgtccaagtgggtgcgtaacctggtcaggcaccacgacaccttcagcggtgccatgcag
tcgctggtggccttctcccagtgccaacagggggcaggagagacccatggagcagggagc
cagaccttcaacagcaccaccgtcctgtctccagccagtcaatcttcagtgactgtggaa
gatctgtcccactgtcggcccagtcctagccccagctcagactgccttctctgggccacg
gtgcaccacactaccacctctcaggtcccagagccccacacccagctacaggggttcagg
tcctgggttccccctacggtctctgtcccacctgctctgtggcctctccctaccaccagc
actggaaagagtgggaacagaggtgaccagaagcagacacagcaacacccctccactcat
cctaacagtgatcccaaggccccgcccccgaacatctccacttccctgcaccacctcttc
acctccacccctgtgagctccacccacttcaagaccccaatcttccaggcccagaaccca
agcacgcatcaagatcatctggatgacccgccacggcctgactctgtggaggaggaggag
aagaagaagaaccaggagaatgtaagtcaggatccctggaaccccttcccaggagggatg
gcccgtgaggggctggatggaccggcatctacccctcccagccaggaccagggtccggtt
ctagacctctccccagtggaggtccctgccagttgtgagcccagacagaccactgtagtt
gttgatgatcccaccctgctagaggaagaggaagaccagagcatcttcttcacaccggag
atgtttgatgacgaagaggaggtggtggacaccaagcctctccctaggacagtgcagggg
atgatgacaggggagggaactgtgcttgcgtccagccttgccctctctaccggaacagcc
caggctctgtctgaggacctgtttgccccagaggagggtcccagggagggcacagagaca
gtcactaccactgataccaagaggggcggcactctcgctccctcagccagtagagactgt
gtcagtgtgggatgggaacaggacaggcagcaggggagtaggatagggagtggtgacgag
gtccaacagacccagagacaggaggaccaaggtcagggagaaggacagggggcgaaccag
ggggcgaaccagggggcaacccagggggcaacccaaggccagagcaggcagacaggcagc
aggacacacagactgtccaggtccagacagaaagctccagagccatcctcaggtaaacta
accagctacttctttgttgtccctcaggttataaccatagacaactag
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