Salmo salar (Atlantic salmon): 106581030
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Entry
106581030 CDS
T04363
Name
(RefSeq) scavenger receptor class F member 1-like
KO
K24318
scavenger receptor class F member 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
106581030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106581030
Membrane trafficking [BR:
sasa04131
]
Endocytosis
Phagocytosis
Scavenger receptors
106581030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_Teneurin
EGF_TEN
EGF_2
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
106581030
NCBI-ProteinID:
XP_014018172
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Position
ssa20:55901029..55908913
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AA seq
962 aa
AA seq
DB search
MGQFLTGLGLLLCCSLSAPQRLAPSGRNVCRDPRDPSTLVCCTGWRQQREECTLPVCDGE
GACQQDEVCVYPGVCRCRPGYYGAHCKTRCPPEFWAPDCRELCKCHPHGRCDPITGECTC
LSNRWGPLCQNACKCGRYGHCHPVHGNCTCDEGWWTPTCAKQCQCYPGTSTCDPLTGRCQ
CAPGYWGQKCSLRCSCYISSCQQKTGACECQNGWWGPTCDRRCNCDLEHSECNAVSGECV
CQPGYKGAFCNEPCGPGEYGSGCKLSCGHCEGGQSCSVVDGVCTACEPGWNGTHCDRLCP
HGYHGNHCQEACPRCRNGEPCDPRTGACSRCDPGWTEPRCDEPCSNRTFGDACRSLCSPC
FHGHCDHVTGSCVCGPGFQGRSCNITCPDQLYGFNCSSVCDCGEGTACHPATGACPYSGH
RALITGLLVPLLLVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKRHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTEGSFFDSDEETGEVLYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNIFPDPSAFSISAEDMSLPFGIPRTSSNAKSKCPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAHGGKASEGEETETGEGGVD
GCGGGTGPLEDPESSGEAGDPDVDRYTATPSRAMSTLQVPGAVVGRRRTISNAAVPRKGG
QTPGSTSDGQQAEMDKGMDKVTTVYVTVGKVGVGVGRPLSKLELPSSEGPVQAVLRRLGS
LQRHKDQEVGTKPKGKCPGAEGITKPPRRKLGTRASVWEQGGPPPSGVEGAVGEGVSMRK
PSRRKQHAHHSSPAVMGNTDAGTNTQPPPEDAPATVTPTRPLSSILKSVPEVAGSEVRGE
RSGVRGENGDPGMQTESGYRTIGPAGFVTDAVSLSEVIANEGVVAGVDDGPNLYENVMIM
HS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggccagtttctgacgggtctaggattactgctctgctgttccctctccgcccctcag
agactggctccctcagggagaaacgtctgccgggaccccagggatccttccactcttgtc
tgttgcactggatggagacaacagagagaggagtgtactttacctgtgtgtgatggcgag
ggggcctgccagcaggatgaggtgtgtgtttacccaggcgtctgtcgctgtcgccctggc
tactatggagcccactgcaagacacgctgccctccagagttctgggcaccggactgccgt
gagctgtgcaagtgccaccctcatgggcgctgtgacccgatcacgggcgagtgtacgtgc
ctctccaaccgctgggggccactctgccagaacgcctgcaaatgtggtcgctatggacac
tgccaccccgtacacggcaactgcacctgcgacgagggctggtggacacccacctgtgcc
aaacagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcag
tgtgccccgggttactggggtcagaagtgcagtcttcgatgtagttgctacatatcatcc
tgccaacagaagacgggggcgtgtgaatgccagaacgggtggtggggtccgacgtgtgac
cgccgctgtaactgtgacctggagcacagcgagtgtaatgcggtcagtggggagtgtgta
tgtcagcctgggtacaagggagccttctgtaacgaaccgtgtggacctggggagtatggc
agtggctgtaaactgagctgtggccactgtgaaggaggccagtcgtgctctgtggttgat
ggtgtctgtacggcctgtgagcctgggtggaacggcacacactgtgaccggctgtgcccg
catggttaccatggaaaccactgccaggaggcgtgcccacgctgcaggaacggtgaacca
tgtgaccccaggacgggggcgtgttcacgatgtgacccaggatggaccgaacccaggtgt
gacgagccgtgctctaacaggacatttggggacgcctgccgctccctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgggcctgggttccaggga
cggagttgtaacatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gattgtggagagggcaccgcctgtcacccagctacaggggcgtgtccatatagtggtcac
agggctctgatcactggtctcctggtccctctgctcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagagtagcagtgggtgacggt
ggtacctctgtccgtatgaagcgtcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctgcccagagtcacagtgtcccaccacgac
cctgagctgacgttcaaccacagcttcatagagcctccctcctcaggctgggtgacggag
ggatccttcttcgacagtgatgaggagaccggagaggtgctctactgtgtcccccccaga
gaagacatcccagcagtggcgggcggtgagttccaggagttccagcatgagatgagttct
aagtgtaacatcttccctgacccctctgccttcagtattagtgcagaagacatgtccctc
ccctttggcattccccgcacctccagcaacgccaagtccaaatgcccctccgtctccttc
gccgaaggcaccaggttcagccccaaggagcgccgaggctctgcccaggatttgacaccc
ggggccccccgcaccaaacccaagtccccctggggggtcctgatgctatcagccctccag
gcccatggagggaaggcctcagagggggaagagacggagacaggtgaggggggggtggat
ggatgtggaggtgggactggaccattggaagacccagaatccagtggtgaagcaggggac
cccgatgtggacaggtacacagctaccccatcccgagccatgtctaccctgcaggtgcct
ggagcagtggtagggcgaagacgcaccatatccaacgctgctgttcccagaaagggtggg
caaacaccagggtccacatccgatggccagcaggcagagatggataaagggatggacaaa
gtgaccacagtgtatgtgacagtggggaaggtgggggtgggggtggggaggcccctgtct
aaactagagctccccagctcggagggcccggtacaggccgtgctacgcaggctaggcagc
ctccagagacacaaagaccaggaggtgggaactaagcccaaggggaagtgcccgggggcg
gaggggatcaccaagccccccaggaggaagctggggactagggccagtgtgtgggagcag
gggggtcccccaccttcgggggtggagggtgctgtaggggaaggcgtatctatgaggaaa
cccagtaggaggaaacagcacgcccaccacagctcccctgctgtcatgggaaacactgac
gctggcactaacactcaacccccaccagaggacgcccctgccactgttacgcccacgagg
cccctgtcctccattttgaaaagcgtgccagaggtcgctgggtcagaggtcaggggtgaa
aggtcaggggtgaggggagagaacggcgaccctgggatgcagactgagagtggatatcga
acaatcgggccagctggatttgtaacggatgctgttagtctgagtgaagtcatcgccaat
gaaggagtggtggccggtgtggacgatggacctaacctttatgagaacgtgatgattatg
cattcctaa
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