Salmo salar (Atlantic salmon): 106581105
Help
Entry
106581105 CDS
T04363
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106581105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106581105
03036 Chromosome and associated proteins [BR:
sasa03036
]
106581105
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106581105
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106581105
PBAF complex
106581105
GBAF(ncBAF) complex
106581105
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
BRCT
HEAT_GCN1
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
106581105
NCBI-ProteinID:
XP_014018327
UniProt:
A0A1S3NSE5
LinkDB
All DBs
Position
ssa02:23145669..23167545
Genome browser
AA seq
1101 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGVGTAVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKSFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSPTQQEDEEWLRPVMRKDKQVLVHWGMYPDSYDTW
VSPSDVEGDVEDPPTSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEDEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNSKKDSENTPVKGGAVADLDDLEDDSVVSGGKE
EEEQGKAEVNRLIDSIEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPQIPSGQQMLNFPEKGKDKPSDMQNFGLR
NDLFSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVRKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKMDT
DSDSQQPDKSYLSLSQAESKDEAEKPSESAEKLAEGEKVKSEMTEREEEESEGGEGKATA
DKDKEAAMETSEEDKEKEEQGTMEEEEEERKKLEPDGGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQQANAAAQGPAPHHGPPGPGMHHGPPHHGPPPAIHSGHGPPGPG
FHPMGPNHPQQTGPMGGPGQPMPGRMMGGAPPTGSMPPMMGPRHPGAPNGMYPGPSPVQP
DGMPPASVGPQAAAPARVADN
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggacctgcagccggccct
gtgggcgtcggtactgcggtgggccgtaagaaagatggaggtccttcgtcgaaatactgg
gagagcgcagaaacggtctctcagatcgattcggtgcgccaatggatcgggaaacactac
aaaaagtatgtacaggcagactctccctccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgctttcggacgtagggtcaacaaccctgccctcaccaag
ttacctaccaagagcttcctggacttcaaggcagggggtgctctgtgtcatatcctgggc
tccacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtggagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccaactgtcttcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaagagacaccagggctccatcactgaggacaagtctaaggccacc
catcatatctacccctctccaacccagcaggaggatgaggagtggctgcgtccggtcatg
cgtaaggacaagcaggtgctggtacactggggcatgtacccagacagttatgacacctgg
gtgtcccccagcgacgtggagggggatgtggaggacccacccacctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacaccgatgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaacgccgccgggaag
aagaggaggcgctcgccatctcccccgaccaccccagccgagtcccgcaagaagggtggc
aagaaggggaaccctggatctcactggaagcgtcgtggccaccgtggcgaggacgaggag
gaggaagaggacctgaccaaagacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaactctaagaaagacagcgagaacaccccagtgaaggga
ggggcagtggctgatttggatgatctggaggatgactctgtggtctccggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccatcgaggacaacgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccacgagattgagaggcgtgcactgccggagttcttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacttgacgggagatgtgtgtgccgtc
atgagggtccatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccgacccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgccccccacagatcccctccggccagcagatg
ctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aacgacctcttctccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggatgactggaac
aaggtgtcagagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaactctgagtcgtccctgggccctctggcctac
cagcccgtacccttcagccagtcaggcaaccccgtcatgagcaccgtggccttcctggcc
tccgtggtggacccccgtgtggcctccgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcggagctggtggaggcccatgtgaggaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccccgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgagccagcagagacagagaagatggacaca
gactccgactcccagcagcctgacaagtcttacctgtctctgtctcaggctgagtctaag
gacgaggcggagaagcccagtgagtctgctgagaagctggctgagggagagaaggtgaag
agcgagatgaccgagcgggaggaggaagagagcgagggaggagagggcaaggctacagca
gacaaagacaaggaggcggccatggagacctcggaggaggacaaggagaaggaggagcag
ggaacgatggaagaggaggaagaggagaggaagaagctagagccggacggaggggagggt
aacatcgccactgcagccgccgctgccctcgcctcagctgccaccaaggccaagcacctg
gcggcggtggaggagaggaagatcaagtctctggtggctctgctggtggagactcagatg
aagaagctggagatcaagctcagacactttgaggagctggagaccatcatggaccgagag
aaagaggctttggagttgcagaggcagcagctgctgacggagcgccaggccttccacatg
gagcagctgaagtatgctgagatgaaggcccgccagcagatggagcagcagcaggccaac
gcagcggcccagggccccgcaccccaccatggccccccagggccaggcatgcaccacgga
cccccccaccatggaccccctcccgccatacactcaggacacggcccccccggccccggg
ttccaccccatgggtccaaaccacccacaacagacaggaccaatgggagggcccggtcag
cccatgccagggcgcatgatgggtggcgccccccccactggcagcatgcctcccatgatg
ggtccccgccaccctggagcccccaacggcatgtaccctggcccctcgcctgtacagcct
gatggtatgcccccagcgtctgtgggacctcaagcggcagccccagcacgagttgctgac
aactaa
DBGET
integrated database retrieval system
