Salmo salar (Atlantic salmon): 106581461
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Entry
106581461 CDS
T04363
Name
(RefSeq) ATP-dependent RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106581461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106581461
03012 Translation factors [BR:
sasa03012
]
106581461
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106581461
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
106581461
Translation factors [BR:
sasa03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
106581461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
AAA_22
nSTAND3
AAA_19
NB-ARC
ATPase
Rad17
NPHP3_N
AAA_16
DUF7428
AAA_23
Motif
Other DBs
NCBI-GeneID:
106581461
NCBI-ProteinID:
XP_014019005
UniProt:
A0A1S3NUT3
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All DBs
Position
ssa20:complement(77723238..77731339)
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AA seq
658 aa
AA seq
DB search
MSYGGYGGRGGRRGGRRGGRGFGRDGSRERWDRLAGSSGGGHPRSTESESREDRGERGGG
PNRPPPHLKGREIGLWYAKWGGLKRKENERKSRAVVQMDESREQHITNLLNTVQRGPTCP
GPAREAHPSTSEHWRSAPSAPVGGGHCYFDGDEPSQDVLKIDLKQEKKKKEDEERPVQNT
TLTSQRYFLQDVLKAEPKEEREEKERRGKDKDLEYLFQEVVRENALDQQLKRDLERKKAD
SKYLDMLKFREKLPSFGKKEELVELIRSSQVLVVSGETGCGKTTQVTQFILDDYIERGMG
SVCRVVCTQPRRISAISVAERVAAERAESVGDGNSCGYQIRLQSRLPRKQGSVLYCTTGI
ILQWLRSSPLLSTISHLVLDEIHERNLHSDVLLIIVKDLLRVRQDLKVILMSATLNAEKF
SKYFNNCPMIHIPGMTFPVQEFLLEDVLEMIRYRPQRKEQRPRWKRGFMQGQNSRPEKDQ
KEAEYKESWPCYARTIRDKYSDRTIDVLEMMDDDDKIDLELIVQLIRHIVLSQEEGAILV
FLPGWDNISGLNDLLMAQQMFKSDRFVIIPLHSLMPTVTQTSVFKRPPPGVRKIVIATNI
AETSITIDDVVFVIDGGKIKETHFDTQNNISTMTAEWVSLANAKQRRGRAGRVCPGNW
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggaggttatgggggcagaggcggccgacgaggtggccgaagaggaggtcga
ggattcggacgggatgggagccgggagaggtgggatcgcctagctgggtcgagtggtggt
ggacacccgcggagcaccgaatcggagtcgagggaagaccggggagaacgaggtggggga
ccaaaccgtccacccccgcatctaaagggccgggagatcggactgtggtacgccaaatgg
ggaggcttgaagaggaaagaaaatgagagaaaatcgcgggccgtggttcagatggatgag
tccagggaacagcatatcactaatctgctgaacactgtccagagaggaccgacatgcccg
ggcccagccagggaggcccacccctccacatctgagcactggcgttcagccccttcagca
ccggtcggaggcggccactgttactttgatggtgatgagccctctcaggatgtcctgaaa
attgatctcaaacaagagaagaagaagaaggaggatgaggagaggccagtacagaacact
acactcacatcacaacgttacttcctacaggatgtccttaaagctgaacccaaagaagag
agggaggagaaggagaggagagggaaggataaagacctggagtacttgtttcaggaggtg
gtcagggagaatgccctggaccagcagttaaagagagatctagagaggaagaaggcggac
tctaaatacctagacatgctgaaattcagggaaaagcttccatcctttggaaagaaagag
gagttggtggagttgatcaggtccagccaggtgctggtggtcagtggagagacagggtgc
ggtaagaccacccaggtgacccagtttatcctggatgactacatagagaggggcatgggt
tcagtctgcagggtggtctgcacccagccacgtcgcatcagtgccatatctgtagcggag
cgggtggctgcggagagggccgagagtgtgggggacgggaattcatgtggttatcagatc
cgcctgcagagtcggttaccacggaaacagggctcggtgctgtattgtacaactggtatt
attctacagtggctccgctcatcccctctgttgtccaccattagccacctggttttggat
gagattcatgagaggaaccttcactctgatgttctgctcatcatcgttaaagacctgctc
cgagtccgacaggacctcaaggtcatcctcatgagtgccacgctcaacgctgagaagttc
tccaaatactttaataactgtcctatgatccacatcccggggatgaccttcccagtgcaa
gagttcctactggaggatgtattggagatgattaggtaccgtccccagaggaaggagcag
aggcccaggtggaagagaggtttcatgcagggtcagaactccagaccggagaaggaccag
aaagaggccgagtacaaggagagctggccctgctacgcccgcacaatacgagacaagtac
tctgacagaaccatagatgtgttggagatgatggacgatgatgataagattgaccttgag
ctcatcgtgcagctgatcagacatatcgtgctaagccaagaagaaggagccatcttggtg
ttcctgccaggttgggacaacatcagtggcctcaacgacctcctcatggctcagcagatg
ttcaaatcagatcggtttgtgatcattcctctgcactccctgatgcctactgtcacccag
acctcggtgttcaaaaggccccctccaggagtcaggaagattgtcattgccaccaatatc
gctgagaccagtattaccatagatgatgtggtgtttgtgatagatgggggaaagattaag
gagactcactttgacactcagaacaacatcagcactatgactgcagagtgggtcagcctg
gccaatgccaaacagagaagaggacgcgccggcagggtgtgtccaggtaactggtag
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