Salmo salar (Atlantic salmon): 106581829
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Entry
106581829 CDS
T04363
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106581829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106581829
Spliceosome [BR:
sasa03041
]
Complex A
U1 snRNP components
U1 related factors
106581829
Complex B
106581829
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
Motif
Other DBs
NCBI-GeneID:
106581829
NCBI-ProteinID:
XP_014019693
UniProt:
A0A1S3NWB7
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Position
ssa21:complement(13560052..13591317)
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AA seq
891 aa
AA seq
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MSSDGNNGQSQAPPFAGVPTSGMPPPFMGPPGMPPHYPPMGIPPMGQRPPNMAPMPPGMM
PPGMMPPMGQIPGMMPPMMPGMMMPPHMPAAAMQPTGPPGVDTTVTAAPGTVGTTNGTPQ
DDQPKKKSVWTEHKSMDGKTYYYNTETKQSSWEKPDDLKSPAEQMLSKCPWKEYKSDNGK
AYYYNSQTKESRWTKPKELEDLEAMIKAEENGTSEVGAPCAVIAPTLQPDSAAVMATMMM
DMPVMMPITTVSEEQMSQVPMHVAEVSAETPVNSTEEAVGVEASASNDASKDERPELVKK
TYKWNTKEEAKQAFKELLKEKGVSSNASWEQAMKMIINDPRYSALPKLSEKKQAFNAYKV
QTEKEEKEEARLKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPERDRLE
IYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTFAED
EELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDELHDHGQ
LHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHDEKRII
KDILKDKNFLVEVNTSFEDFGSVISSDKRAMTLDAGNIKLAFNSLLEKAEAREREREKEE
ARKMKRKEATFKSMLKQATPALEPEATWEGVRERFLKESAFEDVTLESERKRIFKDFMHV
LEHECQHHHSKTKKHSKKSKKHHRKRSRSRSRSRSGSESDGEDDYHNKKKKRSQSKSPSE
RSSSGESERSYKKSKKHKKKGKKRRHKSQSPESEAERKDKGRERDSKREKDQEKEKESDK
SRGKSRSDSKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatggtaataatggccagagccaagcacctccttttgctggggtcccaacc
tcaggcatgccaccgccttttatgggaccaccgggaatgccgcctcattacccaccaatg
ggaattccacccatgggacagaggcctcccaacatggctcccatgccgcctggcatgatg
ccacctggtatgatgccaccgatgggacagataccaggcatgatgccacctatgatgccc
gggatgatgatgccccctcacatgcctgctgcggcaatgcagccaacaggaccgcctgga
gtggacacaactgtcactgctgcacctggaacagttggtaccacaaatggcacgccacag
gatgaccaaccgaagaagaagtctgtgtggacagaacacaagtctatggatgggaagacc
tactactacaacacagagacaaagcagtcttcttgggagaagcctgatgacttgaaatct
cctgcagaacaaatgctgtcaaaatgcccatggaaggagtataaatcagacaatgggaag
gcgtactactacaactcccagactaaggagtcccggtggaccaaacccaaagagcttgaa
gatctggaagccatgataaaagccgaggagaatgggacatcggaggtaggcgctccttgc
gctgtaatcgcccccacccttcagcctgacagcgctgctgtcatggcgaccatgatgatg
gacatgccggtcatgatgccgattacaaccgtttcggaggagcagatgtcccaggtgccc
atgcatgtagcagaggtcagtgctgaaacgcctgtgaactccacagaagaagcggtcggc
gtggaggcctcagccagtaatgatgcttcaaaggacgagaggccagagctggtgaagaaa
acgtacaagtggaacacgaaagaagaggcaaagcaggcctttaaagagctcctgaaggag
aagggcgtttcatccaatgcatcttgggaacaagccatgaaaatgatcatcaatgaccca
cgctacagtgccctgcccaaattaagcgagaaaaagcaggcattcaatgcttacaaggtg
cagacagagaaagaggagaaggaggaggccagactcaaatacaaggagtccaaggaaacg
tatcagagatttttggaaaatcacgagaaaatgacatctaccaccagatacaagaaagca
gagcagatgtttgcagagctggatgtgtggagcaccgtcccagagagagacagactggag
atctatgaagatgtcctattctacctggccaagaaggagaaggagcaagccaagcagctg
aggaagaggaactgggaggcgctgaagaacatcctggacaacatggccaacgtgacgtac
cgcactacctggtccgaggcccagcagtacctgctggacaaccccaccttcgcagaggac
gaggagctccagaacatggacaaggaggatgctctgatctgtttcgaggagcacatccga
gcgctggagaaggaggaggaggacgagaagcagaagactctgctgagggagaggaggcga
cagcgcaagaacagagagtccttccagaaattcctggatgagctccatgaccacggtcag
ctccactccatgtcggcctggatggagatgtaccccaccgtcagctcagacatccgcttc
gccaacatgctgggccagccagtttatggtgtctattctgcaggctccactcccctcgat
ctgttcaagttctatgtggaagacctgaaggctcgctaccacgacgagaagaggatcatt
aaggatatcctgaaggacaaaaacttcttggtggaggtcaacactagctttgaagacttt
ggctctgtgatcagctcagacaagagagccatgacgctggacgcaggcaacatcaagctg
gccttcaacagtttgctggagaaggcggaggctcgggagagggagcgggagaaggaggag
gccaggaagatgaagaggaaagaggctacctttaagagcatgttgaagcaggccaccccg
gccctggaaccagaggccacctgggagggggttcgagaaaggttcctcaaagaatctgcg
ttcgaagacgtgactctggagtctgagaggaaaaggatattcaaagacttcatgcatgtc
ttggagcacgagtgccagcatcatcactccaagaccaagaaacattctaagaagtccaag
aagcaccataggaagcgctcccgctcacggtctcgatcgcgatcgggctcggagtctgat
ggggaagacgattatcacaacaagaagaagaagcgctcacagtccaagtccccatccgag
cgctcctccagcggcgaatctgagagaagttataagaagtccaagaagcacaagaagaag
gggaagaagaggcgtcacaagtcgcagtctcctgaatctgaagccgaacgaaaagataaa
ggaagagagagggacagcaagcgtgagaaggaccaggagaaggagaaagagagcgacaag
tcccgggggaagagtcgctctgactccaagcagaagtcgcctaaaaggaaatctaccaag
gaagagggtggctgggacacatcaggcagcgagctgagtgaaggagagctggagaagagg
aggaggactctactagaacagctggatgctccttaa
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