Salmo salar (Atlantic salmon): 106581870
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Entry
106581870 CDS
T04363
Name
(RefSeq) ATP-dependent RNA helicase DDX18-like
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106581870
03009 Ribosome biogenesis [BR:
sasa03009
]
106581870
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106581870
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106581870
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
90S particles
Helicases
106581870
Pre-60S particles
106581870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
AAA_22
FlgK_D1
Motif
Other DBs
NCBI-GeneID:
106581870
NCBI-ProteinID:
XP_014019779
UniProt:
A0A1S3NWM2
LinkDB
All DBs
Position
ssa21:10596816..10611563
Genome browser
AA seq
663 aa
AA seq
DB search
MADLQMRLLRQKIQKRSEKNKERKLLHKRKQEEDNDDASGLPEECCDERSQVATAISKPQ
NVKPTNKQQKEKNVSAKVDTEHFVKKKNKRKLGTTEQQGVKKAKKEEDVTEEDADQTTDK
PTQPLEQGVEGEDDEEGSEDEAERGEGEKFEEEDEPELPSGLTGAFEDTSFASLAPLVSE
NTLKAVKEMGFEHMTEIQHKSIQPLLEGRDILAAAKTGSGKTLAFLIPSIELIYKLKFMP
RNGTGVVILSPTRELAMQTYGVMKELMTHHVHTFGLIMGGSNRTAEAQRLANGVNILVAT
PGRLLDHLQNTAGFMYKNLQCLIIDEADRILEVGFEEELKQIIKLLPKRRQTMLFSATQT
RKVEDLARISLKKEPLYVGVDDNKDNATVDGLEQGYVVCPSEKRFMLLFTFLKKNRKKKL
MVFFSSCMSVKFHYELLNYIDLPVMAIHGKQKQTKRTTTFFQFCNADSGILLCTDVAARG
LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGINGIGHALLILRPEELGFLRFLKQAKVPL
SEFEFSWAKISDIQGQLNKLIEKNYYLHKSAQEAYKSYVRAYDSHSLKAIYSVNTLNLPM
VAQSFGFNVPPYVDLNVHSKGGLKMTKRGGGGGFGYQKGKPAHKAKIFKHVNKGKGDKRQ
FSR
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atggcagatcttcagatgaggcttcttcggcagaaaatccagaaaagaagcgaaaagaac
aaagagcgaaagctacttcataaacgcaaacaggaggaagataatgacgacgcaagcgga
cttccagaggagtgttgtgatgaaaggagtcaggtggccacagcaatatcaaagccacag
aatgtcaaacccacgaataagcagcaaaaagagaagaatgtgtcggcgaaggtggacaca
gaacattttgtcaagaagaaaaataaaagaaagctcggcaccactgaacagcaaggtgtg
aaaaaagcgaagaaggaggaggatgtgacagaggaggatgctgatcagaccacagacaaa
cccacacagcctcttgaacagggagttgagggggaggatgatgaagagggaagtgaggat
gaggcggaaaggggggaaggagagaagtttgaggaggaagatgaaccagagctcccatct
ggcttgacaggtgcgtttgaggacacgtcatttgcctctctagcgcctctggtgagtgag
aacactctaaaggctgtgaaggagatgggctttgagcacatgactgagatccaacacaaa
agtatacagcccctactggagggaagagatatcctggctgctgctaagactggcagtggt
aaaactctggccttcctcatcccctccatcgagctcatctacaaacttaaattcatgccc
agaaatggtacaggcgtggtgatcttgtccccaacgcgcgagttggccatgcagacatac
ggcgtgatgaaagagctgatgacccaccacgtgcacaccttcggcttgatcatgggcggc
agcaaccgcacggccgaggcccagaggctggccaatggcgtcaacatcctggtggccaca
cccggcagactgcttgaccacctccagaatactgccggcttcatgtataagaacctccag
tgtctgattattgacgaagctgaccgtatcctggaggtcggctttgaggaggagctgaag
cagatcatcaaactcctgccaaagcggaggcagacaatgctgttctcggccacccagacc
cgcaaggtggaggacctggcccgtatctccctgaagaaggagcccctctacgtgggtgtg
gacgacaacaaggacaacgcaaccgtggacggcctggagcagggctatgtggtgtgtccc
tcagagaagcgcttcatgctgctcttcaccttcctgaagaagaaccgcaagaagaagctg
atggtgttcttctcctcctgcatgtcggtcaagttccactatgagctgctcaactacatt
gacctgcctgtcatggccatccacgggaagcaaaagcagaccaagcgtaccaccaccttc
ttccagttctgtaacgccgactcaggcatcctgctttgtacagacgtggcggccagaggc
ctggacatccctgaggtggactggattgttcaatatgaccccccagatgaccccaaggaa
tacatccacagggtgggcagaacggctcgcgggatcaacggcataggtcatgccctccta
atcctcaggccagaggagctgggcttcctgcgcttcctcaaacaagccaaggttcctttg
agtgagtttgaattctcttgggcaaagatctctgatatccagggtcagctgaataagctg
attgagaagaactactacctgcacaagtcagcccaggaggcctacaagtcctatgtgcgg
gcgtacgactctcattccctcaaagcgatctacagtgtcaacacgctcaacctccccatg
gtggcacagtctttcggctttaatgtgcctccctacgtcgacctcaacgttcacagcaaa
ggaggactgaagatgacgaagaggggtggaggcggcggcttcggctaccagaagggcaag
cccgctcacaaagccaaaatcttcaagcacgtcaacaaaggcaagggggacaagaggcaa
ttctcacgctga
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