Salmo salar (Atlantic salmon): 106581947
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Entry
106581947 CDS
T04363
Symbol
ddx3x
Name
(RefSeq) DEAD-box helicase 3, X-linked
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
106581947 (ddx3x)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106581947 (ddx3x)
03041 Spliceosome [BR:
sasa03041
]
106581947 (ddx3x)
03036 Chromosome and associated proteins [BR:
sasa03036
]
106581947 (ddx3x)
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106581947 (ddx3x)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106581947 (ddx3x)
mRNA cycle factors
Common to processing body (P body) and stress granule
106581947 (ddx3x)
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106581947 (ddx3x)
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106581947 (ddx3x)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
106581947
NCBI-ProteinID:
XP_014019974
UniProt:
A0A1S3NX65
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All DBs
Position
ssa21:complement(22685345..22711195)
Genome browser
AA seq
745 aa
AA seq
DB search
MSHVVVDNQHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNENAYSSGRQYGYS
VPPPVNFYSPGGWDSGRSNGFANGYHDNRNAGFGGRGGPPRNDRGGRGSYRGNSMGGASF
NQPMHIAGFSGGQDGGGWGGTPRQDAAYNSFGGRGKSSFYNDRGSSGGRGYQRGGYGGGG
NNRWQEDSRDDEDWSKPSPANERLEAELFSSGNTGINFEKYDDIPVEATGSNCPPHIDSF
HDVDMGEIIMSNIALTHYTRPTPVQKYAIPVIKSKRDLMACAQTGSGKTAAFLVPVLSQI
YTQGPGDATAAGKNGQDSGKYGRRKQYPLSLVLAPTRELALQIYEESRKFAYRSRVRPCV
VYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEP
QIRRIVEQDTMPPKGIRQTMMFSATFPKEIQMLARDFLEDYIFLAVGRVGSTSENITQKV
VWVEDGDKRSFLLDLLNATVIPSDAPDVQEAAVTPGKESLTLVFVETKKGADALEDFLYR
EGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDISNVKHVINFDLPSDIE
EYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLGYENQHKGN
TGRGRSKRFSSGGFGARDYRQTPGGGGFGGGGGRGGPRTGGYGGGGSRGGFGGGGFGGGN
SYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatcaacacggtctagatcagcagcttgctggcctagac
ttgaactctgacgggcagggaggaggcacaggcaggcgttacattccacctcacttgagg
aacaaagaagtttccaaaaacgaaaatgcttattcctctggtagacagtacggttattca
gtgccacctccagtgaacttctactctccaggaggatgggacagcggacgcagcaacggc
tttgccaatggttaccatgacaaccgcaatgcgggcttcgggggacgcggcgggcctccc
cgaaatgacagaggtgggcgtggcagctaccgcggtaacagcatgggtggcgcctcgttt
aatcagccaatgcacatcgcagggtttagtggtggacaggatggtggaggctggggaggt
actcccagacaagacgcggcctataacagctttggcggaaggggcaagtcttctttctac
aacgaccgtggatcatcagggggcagaggttatcagcgtggaggttatggcggtggaggc
aacaaccgctggcaggaagactccagggatgatgaggactggtccaaacccagccccgcc
aacgaacgcctagaagcggagctgttctcaagcggcaacacgggtattaactttgagaaa
tatgacgacattcctgtggaggccactggatccaactgcccgccacacattgatagtttc
catgatgtggacatgggggagatcatcatgagcaacattgccctgacccactacacgcgg
cccacccctgtccagaaatacgctatcccggtcatcaagtccaagagagacctcatggct
tgtgctcagactggctcgggtaagactgcagccttcctggtgccagtgctgagccagatc
tacacacaggggcctggagacgctacagcggctggcaagaacggacaggacagcggtaaa
tatgggcgccgtaagcagtatcctctctccctggtcctggctcccaccagagaactggcc
ctgcagatctacgaagagtccagaaagtttgcgtaccgctcccgtgtgcgtccctgtgtg
gtgtacgggggggctgacatcggccagcagatcagagacctggagcgaggctgccacctt
ctggtggccacacccgggcgcctggtggacatgatggaaaggggcaagattggcctcgac
tactgcaactacctggtgctggacgaggctgacaggatgttggacatgggttttgagccc
cagatcagacgcatcgtggagcaggacaccatgccacctaaaggcatccgtcaaaccatg
atgttcagtgctaccttccccaaggagatccagatgctggcgcgtgatttcctggaggac
tatatcttcctggccgtgggccgcgtgggctccacctcagaaaacatcacccagaaagta
gtgtgggtggaggatggcgacaagaggtccttcctcctggacctgctcaacgctacagtc
attcccagtgatgctcctgatgttcaggaggctgcagtgacacccggtaaggagtctctg
acattggtgtttgtggagacgaagaagggagcggacgccctggaggacttcctgtatcgt
gagggctacgcctgcaccagtattcacggtgatcgctcccagagagaccgagaagaggcg
ctgaaccagttccgctctggccgctgccccatcctggtggccactgcggtggctgcgcgg
ggtctggacatctctaacgtcaagcacgtcatcaactttgacctgcccagcgacatagag
gagtatgtccaccgtatcggtcgtacaggccgcgtggggaacctgggtctggccacgtcg
ttcttcaacgacaagaacagcaacatcaccaaagacctgctggacattctggtggaggcc
aagcaggaagtaccgtcctggctggagagcctgggttatgagaaccagcacaagggcaac
acaggacgcggacgctccaagaggttctcctctggtggatttggtgccagggactaccgt
cagacacccggtggtggcggcttcggcggtggcggtgggcgcggtggcccacgcaccggg
ggttatggaggcggcggaagccgtggtggctttggtggaggtggctttggaggcgggaac
tcctatggcggcaacgatgcgggctacggtggcaactacagccactccggtagtggaaca
gactggtggggcaactag
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