Salmo salar (Atlantic salmon): 106582005
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Entry
106582005 CDS
T04363
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
sasa
Salmo salar (Atlantic salmon)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
EMP70
Motif
Other DBs
NCBI-GeneID:
106582005
NCBI-ProteinID:
XP_014020110
UniProt:
A0A1S3NXW0
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Position
ssa21:25914219..25941153
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AA seq
759 aa
AA seq
DB search
MAVPSLSAPLLVALFQLAVLPLVHAGVYYGHKQHQQHPQQQPQQHQPIPHLSHMGMGGKE
QHPQQQWPGKEMPHMQYPHYRKEIPQMPMHMGKEYPRKGVVVNSGQDKGQTIPSGAVGGL
PGGLPGEQGPAGPAGPEGPSGPPGPPGVGQPGVEGKPGPAGPPGFPGVGKPGLPGIPGKP
GGMGDPGVPGELGPSGGDGHMGQPGPQGPPGPPGLPGIGKPGVGGLPGQPGPKGEPGHKG
LPGLPGLPGPKGDKGIGQPGQPGHKGPAGPHGPPGQRGMPGVGKPGMSGISGPPGGPGKP
GPPGEQGLAGPAGEGGETGPPGLPGQGKPGQNGLPGQPGMPGGKGHPGPPGMPGKPGLPG
FGKPGFPGPKGDKGMGGMPGGPGPKGDKGHGGLPGVIGPPGLIGPAGPLGPMGPPGGLGQ
PGSKGEAGEGGQKGLPGGQGEPGPPGLHGQNGFPGEGGEPGPRGPAGPIGPQGEGGHKGL
PGTPGIPGLSGPKGEGGLPGEKGPQGPKGIPGLGGAGGPIGPPGAPGSKGDSGLPGLPGV
EGNGNPGVPGPLGPPGKEGPGGPPGNPGQPGLPGPPGPPGPPTLSPNMGAVLPEMGIPPG
LDGVKTTGYGKKGKYGGNSGEVMGSNGLEMPAFTALVTTPFPPVGTPVVFDKILYNGRQN
YNPQTGVFTCDMPGIYYFAYHVHCKGANVWVALMRNDEPVMYTYDEYKKGFLDQASGSAV
LPLQPGDTVYLQLPSDQAAGLYAGQYVHSSFSGYMLYPM
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atggccgtgccttctctctcagcccctctcctcgtggctctgtttcagcttgcagtacta
cctctcgtccacgcgggggtatactatggacacaagcagcaccagcagcacccccagcag
caaccccagcagcaccagcctataccacacctgtcccacatgggcatgggcggcaaagag
caacaccctcagcagcagtggccaggaaaggagatgccccacatgcagtacccccattac
agaaaagagatcccccagatgcccatgcacatgggcaaggaatacccccgcaaaggtgtg
gtagtcaacagtggacaggacaaaggtcagaccatccccagtggggctgtgggaggtctc
cctggaggcctgccaggagagcagggcccagctgggcctgcaggacctgagggaccctct
gggccaccaggtcctcctggggtaggacagccaggagttgaaggaaaaccaggccccgct
ggtcccccaggattccctggtgtaggcaaaccaggactcccgggaattccaggcaagcca
gggggcatgggagacccaggtgtacctggagagctgggccccagcggtggagacggtcat
atggggcagccagggcctcagggcccccctggtcctccaggtctcccggggataggtaaa
ccaggggttggggggttgccagggcaaccagggcccaagggggaaccaggacataagggc
ctgccaggactaccaggattaccaggacccaagggtgacaagggaattggacagccagga
cagccaggccacaaagggccagcaggaccccatggacctccaggccagcgagggatgccc
ggtgtgggcaagcctggaatgagtggcatatcggggccaccaggaggaccagggaaacca
ggccctcctggagagcaggggctggctggaccagcaggagagggcggcgagaccggtcca
ccagggctgccaggccagggaaaaccaggccagaatggtctgcctggacaaccaggcatg
cctggtgggaaagggcacccaggccctccaggtatgcctgggaagcctggattgcccgga
tttggaaaacctggattcccaggacccaagggagataaaggaatgggtgggatgcccgga
ggcccaggaccgaagggagacaaaggccatggaggacttccaggtgtgataggaccacct
ggactaatcggaccagctggtccccttggccctatgggaccccctggaggtcttggccaa
ccagggtcaaaaggagaggctggagagggagggcaaaaggggctgccaggtggccagggt
gagcctggtcctcctggactgcatggtcagaatggcttccctggagagggaggagagcca
gggccaaggggtcccgctgggcctataggaccccaaggggaaggcggacacaaagggtta
ccaggcacccctggcattccaggcctatctgggccaaagggagagggaggacttccagga
gagaagggtccccaaggccctaagggcattccaggtctgggaggtgcaggtgggccgatc
ggacctcctggtgcccctgggtctaaaggtgacagcggattacctggtcttcccggcgtt
gagggtaacggaaacccaggtgtccctggtcctcttggacctccaggtaaagaaggtcct
ggaggaccaccaggaaatccaggccagccaggtctacctggtcccccaggcccacccgga
ccccccaccctctcccctaacatgggagcagtcctccctgagatgggtattcctcctggg
ctggacggagtaaagaccaccggctatggcaagaaggggaaatatggaggaaacagtgga
gaggtgatgggctccaacggcctggagatgcccgcgttcacggctctggtgaccacaccc
ttcccaccagtgggcacgcctgtggtgttcgacaagatcctgtacaacggtcgtcagaac
tacaacccccagacaggcgtgtttacctgcgacatgcccggaatctactactttgcctac
cacgtccactgcaaaggggccaacgtgtgggtggcgctgatgaggaacgatgagcctgtg
atgtacacgtatgacgagtataagaagggattcctggatcaggcgtcggggagcgcagtg
ttacctctacagcccggggacaccgtgtacctccagctaccctcagaccaggccgcagga
ctatacgctggccaatacgtccactcatctttctctgggtacatgttgtaccctatgtaa
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