Salmo salar (Atlantic salmon): 106582022
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Entry
106582022 CDS
T04363
Name
(RefSeq) transcription factor Sox-1a
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106582022
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
106582022
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
106582022
NCBI-ProteinID:
XP_014020161
LinkDB
All DBs
Position
ssa21:24555628..24581651
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AA seq
341 aa
AA seq
DB search
MYSMMMETDLQSPGPQTNTHLGQTGQNSGSKANQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLSGAGGGGMGLGVGMGSSGVGQRLESTGGHGGSASSGYAHMNGWANGAYSGQM
AAAAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHHPHNPQPMHRYDMSALQYSPISNSEGY
MSASPSGYGGITYTQHQSSGVSSSAAMGTLGSLVKSEPSVSPPVSTHSRGPCPGDLREMI
SMYLPTGEPGDPSVQSRLHALPQHYQSATAGVNGTVPLTHI
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggagacggacctccagtcccctggaccccaaacgaacacacat
ttggggcaaacggggcagaacagtgggtccaaagcgaatcaggaccgggtgaagcgtccg
atgaacgcgttcatggtgtggtcccgcgggcagcggagaaagatggcccaggaaaacccc
aagatgcacaactctgagatcagcaagcggctgggagccgaatggaaggtcatgtccgag
gcggagaagagacccttcatcgacgaggcgaagcggttacgagcaatgcacatgaaggaa
cacccggattacaagtacagaccgagacggaagaccaagacgctgctgaaaaaggacaaa
tactctctggctggtggcctgctctctggggccggcggcggtggaatgggtctgggtgtc
gggatgggttcatccggcgtcggccagaggttagagagcaccgggggccacgggggctcc
gccagctcaggctacgctcacatgaatggctgggcgaacggtgcgtactcggggcagatg
gctgcagctgctgcggcggcggcgatgatgcaagaggcgcagctagcttacagccagcac
ccgggcagcgggcaccaccaccactcacaccaccaccaccacccgcacaacccccagccc
atgcaccgctacgacatgtcggcgctccagtacagccccatctcgaactctgagggctac
atgagcgcctctccgtccggctacggcgggatcacctacacgcagcaccagagctctggc
gtctcctcctcggctgccatgggcacgttagggtcgctggtgaagtcagagccgagcgta
agccctcccgttagcactcactccaggggcccttgccccggagacttgagagagatgata
agcatgtatttaccgaccggagagcccggggacccgtcggtgcaaagtagactccacgca
ttgcctcagcattaccagagtgcgacggctggggtgaacggaacggttccattaacgcat
atatag
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integrated database retrieval system
