Salmo salar (Atlantic salmon): 106583712 Help Entry 106583712         CDS       T04363                                  Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04510   Focal adhesion sasa04512   ECM-receptor interaction Brite KEGG Orthology (KO) [BR:sasa00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     106583712  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     106583712  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sasa00536]     106583712 Glycosaminoglycan binding proteins [BR:sasa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    106583712 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI VWC Motif Other DBs NCBI-GeneID:  106583712 NCBI-ProteinID:  XP_014023711 UniProt:  A0A1S3P7Y8 LinkDB All DBs Position ssa22:53429386..53512213 Genome browser AA seq 1490 aa AA seqDB search MFSFVDSRTVLLLVATQVVLFAVVKCQDEDQDPGSCMQDGQSYSDKDVWKPEPCRICVCD TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGAPGAKGQKGEPGDITDVVG PRGPGGPMGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGG NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG PLGPRGPPGPSGKPGDDGDAGKPGKGGDRGPSGPQGTRGFPGTPGLPGIKGHRGYPGLDG LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAG PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGSSGEDGRPGPPGPMGARG QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPVGERGEQG QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG PRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG PPGSDGQPGVKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGATG FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPGEKG DAGEDGPPGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRG PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGAPGANGSPG PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG LQGLPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM ETGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTF LRLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDG CTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4473 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcgaggactgtactgctacttgtagcaactcaagtcgttcta tttgccgttgtcaaatgtcaggacgaagaccaggacccaggcagctgtatgcaggacgga cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac acgggaactgtcctgtgtgatgaaataatctgcgaggagattaaagactgccccaaaccc gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagctcccccaagt ggggccccgggagctaagggtcagaagggggaaccaggagatatcacagatgttgtagga ccaagaggacctggaggccctatgggccccccaggagagcagggaccacgtggagacaga ggagacaaaggcgataagggcagtcccgggccccgtggcagagatggcgagcctggtacc cctggtaaccccggcccccctggaccctcaggccctaacggacctcccggccttggagga aactttgctgctcagatggctggaggatttgacgagaaggctggcggagcacagatgggc gtgatgcaaggaccaatgggccctatgggtcctcgagggccacctggcccctctggagct cctggtccacaaggtttccaaggcaatcccggagaggctggagagcccggatcagctggc ccgttgggtccccgtggtccacctggaccctctggtaaacctggagatgacggtgatgct ggcaaacccggcaagggtggtgatcgtggaccttctggtcctcagggaacccgtggattc ccaggaactcccggtctgcctggaatcaaagggcatagaggttatccaggtcttgatggg ctcaagggagagggtggagctgctggttctaagggggagtctggtgcgcccggtgagaat ggcgctcccggacccatgggaccacgtggtctgcccggtgagagaggtcgccccggtccc tctggagctgctggtgctcgtggtaatgacggtctgcccggccctgctggtcctcctggc ccagttggtccatctggtgctccaggcttccccggctctccaggttctaagggagaagct ggccccactggtgctcgtggacctgagggcgcccagggaccacgtggagagtcaggaacc cccggatctcccggacccgccggcgcttctggtaaccctggtactgatggtattggtgga gctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttccctggaccccgt ggccctccaggaccccagggagccactgggcctctcggaccaaagggaacatctggtgat cccggtatcccaggtttcaagggtgaggctggacccaagggagagattggacccgcgggt ccccaaggagcccttggccctgcaggagaggaggggaagaggggacccagaggagagcct ggcgctgctggacctctcggacctcccggagagagaggcgcccccggtaaccgtggtttc ccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc gtgtctggccctaagggagccggtggtgaccctggtcgccctggcgagcctggtcttcct ggtgcaagaggtcttactggtcgtcccggtgatgcaggtcctcaaggaaaagttggaccc ggtggttcttctggtgaggatggtcgccccggaccccctggccctatgggagcccgcggc cagcctggcgtgatgggattccccggacccaagggagccaacggcgaacctggcaagggc ggagagaaaggattgctcggtgcgccaggtctgagaggtcttcctggtaaggatggtgag accggtgctgctggaccccctggccctgctggccctgttggagagagaggagagcaagga caacctggaccttctggcttccagggtctgcccggacctcccggcccccctggtgagggt ggcaagcccggtgacatgggagttccaggagagggtggagctgctggtgccactggacca agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga ccccgtggtcttcctggaactcctggaactgacggacctaagggcgcgatcggaccaggt ggtgcatcgggtgcccagggaccccccggtctgcaaggtatgcccggagagagaggagcc tcaggcattcccggacctaagggagacagaggtgacaacggagagaagggacctgagggt gcttctggcaaagacggttcaagaggtttgactggtccaattggtcctcctggcccagct ggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgctgctggtgcc cgaggtgctcctggtgacaggggtgagactggacctcccgggcctgctggcttcgctggg cctcctggatctgatggtcagcccggagtcaagggagagcagggagagggtggacagaag ggagacgctggtgcccctggaccacagggaccctccggagctcctggaccttccggacct actggcgtttctggacctaaaggtgctcgcggtgctcagggaccctctggtgccactggt ttccctggagctgccggcagagtcgggccccctggtcccaatggtaaccctggtgctgct ggtccctctggccctgctggtaaagatggtcctaagggtgtgcgtggagacggtggaccc ccaggcagacagggagacgctgggctgcgtggagccgctggagcccctggagagaaggga gatgctggagaggatggtccccctggtcccgatgggccttcaggtccttcaggtctggct ggacagcgtggtattgttggtcttccaggacagcgtggagagagaggtttccctggcctg ccaggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtggg ccccctggccctgtggggccccctggactgactggacccgctggagagcccggtagagag ggcaacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgac cgcggtaacaccggtcctgctggtgctcctggcgccccaggagctaatggttcccccggc cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagct ggacctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagac aagggtgaggctggagagggtggtgagagaggacagaagggacacagaggattcactggt ttgcagggtctgcctggacctcccggtcaagctggagaccagggtgcatctggacctgcc ggaccaagtggatcaagaggaccccccggacctgttggtccctctggaaaggatggttcc aacggtatgcccggccccatcggacctcccggaccccgtggtcgctctggagagactggt ccctctggtccccctggaaactccggaccccctggtcctcctggtcctcccggccctggt atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc acactcaagtctctcaacaaccagattgagaacatccgctcccctgagggctccaagaag aaccctgcacgtacttgcagagacctgaagctgtgccaccctgactggaagagtggagag tactggatcgaccctaaccagggctgcaccatagatgccatcaaggtctactgtaacatg gagactggagagtcctgcgtctaccccaagcctgccagcatccccaagaagaactggtgg tccagcaagagcaaggctgccaaacacgtctggttcggggagaccatgaacggaggattc cacttcagctatggcgatgatagcctggctgccaacacggccagcatccagatgaccttc ctgcggctgctatccaccgaggctagccagaacctcacctaccactgcaagaacagtgtg gcctacatggacggggccacgggcaacctgaagaaggctgtgctgctccagggctccaac gatgtggagatcagggccgagggaaacagccgcttcacgtacaccgtcatgcaggacggc tgcacgaaacacacaggagcatggggcaagacagtgattgactacagatcacagaagacc agccggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagttt ggagtcgacgtcggtgcagtctgcttcttgtaa

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