Salmo salar (Atlantic salmon): 106584116
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Entry
106584116 CDS
T04363
Symbol
fip1l1
Name
(RefSeq) factor interacting with PAPOLA and CPSF1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106584116 (fip1l1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106584116 (fip1l1)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
106584116 (fip1l1)
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Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
106584116
NCBI-ProteinID:
XP_014024461
UniProt:
A0A1S3PA23
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Position
ssa23:complement(20537062..20586297)
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AA seq
559 aa
AA seq
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MSAEMDKATDASGGDEEEWLYGDESEEKAEEEEEAPNSAKAQPTAEEVHENGVVKQDTGQ
EDEESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKATGRTHASVGPKAKGV
DLDALGSVNGIPVLEVDMESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGY
EGMNHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKPCGTIDVIGGQ
TATISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSA
PPLIPPPRIPINVPPPGYPPGAPPPSLIPTLDRLHYRGSRIRRDRRRKGGDNDINRDERE
HSYCPTRQNGARRTHSGRSGGYDGRSAPPYPPFPPGVYPPPPPGSAAASWAGVFDSAKAW
EYYAQRDNERERHKERDRTRERGHEKEREREREHNTSSQVVNSEEDRHRHRDYGERGYDR
HHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDSHRRHKHKKVKRSRED
KEPSQELSADQENQSEPTE
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaagcaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgaaagtgaggagaaggccgaggaagaggaagaggcacctaatagtgcaaag
gcccagccgactgctgaggaggtccatgagaatggagtagtgaagcaggatacaggccag
gaagatgaagaaagtgacagtgacagtgaggatgatgatgacgtgtgtgtaaccattggc
gatataaagaccggaggctcgtctcagcctttcaatgcttttggatccacaccagttaat
ctcaacattaaggctacagggagaacacatgcatcagttggccccaaagccaaaggagtg
gacctggatgcactgggcagtgttaacggaatccctgtgttggaggtcgacatggagtct
tttgaagaaaagccgtggagaaagcctggttcggacctctcggactactttaactatggc
tttaacgaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtat
gagggcatgaaccacgcttcagccactaaaatcatggtccaccagggacgttcagcccat
ggcgatagggatggggccctttcctgctttaggtctgactactcctcccccagcaaccac
tacaattcaggctcctccagtagaaagccatgcggcaccattgacgttattgggggacaa
actgctaccatcagcagggtagagggacgaagacgtcacaatatagaaggaaataacatc
caggtgctttctgagcccccctctgatgctgagcctactcccactaagatgccccccttt
tttcctcccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcc
cctccactcattcctccaccaaggatccccatcaatgttcctccacctggctaccctcct
ggcgcaccacctccttctctgattcctaccttagacaggctgcactacagggggagtagg
atcaggagagacagaaggagaaagggtggagacaatgacataaacagggacgagcgagaa
cacagttactgcccaaccagacagaatggagccaggagaacacacagtggacgctctgga
ggctatgatggtcgctcagctccaccgtaccctcccttccctccaggtgtgtaccctcct
cctcccccgggtagcgcagcagcctcctgggccggggtattcgacagtgccaaggcctgg
gagtactacgcgcagcgggacaacgagcgagagcgccacaaggaaagagacagaaccaga
gaacgcggacacgagaaagaaagagagagggagagagagcacaacacttcctcccaggtc
gtcaacagtgaggaggatcggcaccggcacagggactatggggagagaggatacgaccgc
caccaccacgagagatccagcagagagaaagaagagagacaccgagagaagagacaccga
gacaaagaggaggggagacacaagtcctcaagcagtagcagcaggaggagacatgagagt
gaggagggggacagtcatcgaagacacaaacacaagaaagtcaagaggagcagagaggac
aaggagcccagccaggaactctctgctgaccaggagaaccagtcagagcccacagagtga
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