Salmo salar (Atlantic salmon): 106584761
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Entry
106584761 CDS
T04363
Name
(RefSeq) general transcription factor IIH subunit 1-like
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
sasa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106584761
09124 Replication and repair
03420 Nucleotide excision repair
106584761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106584761
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106584761
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
106584761
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
106584761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
106584761
NCBI-ProteinID:
XP_014025783
UniProt:
A0A1S3PDM8
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Position
ssa23:45433950..45451236
Genome browser
AA seq
550 aa
AA seq
DB search
MAALSEEVLLVVKRVRQRKQDGTLYLMAERIAWGPEGKDRFTVSHLYADIRCQKISPDGK
AKIQLQLVLHTGESTNLHFSNESTALKDRDAVKDLLQQLLPKFKKRANKELEEKNRMLQE
DPVLFQLYKDLVVCQVISAEEFWANRLSINNVDHSLSNNKQEVGISAAFLADIRPQTDGC
NGLRYNLTSDIIESIFRTYPAVKQKYGENVPHNMTEKEFWTRFFQSHYFHRDRINTGLQD
IFSECAKQDEKGLKSMVFQGVKNPMVDLLSLEDKSLDEGYGSNSTAPSTSNSNKTVKENS
NSAIIKRFNHHSTMVLAAGSGKKADAPNGQACETSSTDGNSRDSDFFQPPIKKVKIQDVI
EYEDLHRENGKKTVALNLKKSDRYSHGPVPLLPQQYTTSQDIVNSVNCIKHEIASYKPCL
TQVMSSSTASSAIAALSPGGVLMQALAQQAINQMVPNDVQEELKHLYTAAGELLRHFWSC
FPVNTPFLEEKVVKMRSNLERFQMTKLRPFQEKVQRQYLSTNLTGHLEDMLQMAYNKFHA
WQTRRMMRKT
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttgtcggaggaggtgctgctggtggtgaagagggtccgacagaggaagcag
gatgggaccctatacctgatggcagagcggatagcctggggaccagaggggaaagaccgt
ttcaccgtcagccacctgtatgctgacatacgctgtcagaagatcagcccagatggcaag
gccaagattcagctgcagttggtcctacacacaggggagagcaccaacctccacttttcc
aatgagagcactgccctgaaagaccgcgatgcagtcaaggacctcctccagcagctgttg
cccaagttcaagaagagggctaacaaggaattggaagagaagaacagaatgttacaggaa
gatccggtgctgttccagttgtacaaggatctggtggtctgtcaggtgatcagcgctgag
gagttctgggccaatcggctgagcataaacaacgtggatcactccctctccaacaacaag
caggaagttggcatctcggcagccttcctggcggacatccggccccagacggatggctgt
aacggccttagatacaaccttacctctgacattatcgagtcaatcttcagaacgtaccct
gcagtgaaacagaagtatggtgagaacgttcctcataacatgacagagaaggagttctgg
acacggttcttccagtcccactacttccaccgagaccgcatcaacacgggcctgcaggac
atcttctccgagtgtgcaaagcaggacgagaagggcctgaagtccatggtgttccaagga
gtgaagaacccaatggtggacctactgtcactggaggacaagtcgttagacgagggttat
gggtctaactccacagcaccgtctacgtccaacagtaacaagaccgtgaaggagaacagt
aactctgccataatcaagaggttcaaccaccacagtaccatggtgctggcagcaggctcc
gggaagaaagcggatgctccaaacggtcaggcctgtgagactagcagtacagatggaaac
tctagggattcagacttcttccaaccacccattaagaaggtgaaaatacaagatgtcata
gagtatgaggaccttcatagggagaatgggaagaagacagtcgctctgaacctcaagaag
tctgacaggtactctcatggtcccgtgcctctcctgccccaacagtacaccaccagtcaa
gacattgtcaactctgtcaactgtataaagcatgaaatagccagctacaagccctgcctt
actcaggtgatgtccagcagtacagccagttctgccatcgctgccctctccccagggggc
gttctcatgcaggcattagcacagcaagccattaaccagatggtacccaacgacgttcag
gaagagctgaagcatctgtacacggctgctggggagctgctgagacacttctggtcctgt
tttcctgtcaacacgcctttcctggaagagaaggtggtaaagatgaggtccaacctggag
agattccagatgaccaagctccgccccttccaggagaaagtccagcgtcaatacctgagt
actaatcttactggtcaccttgaggacatgcttcagatggcctacaataaattccacgcc
tggcaaacacgtcggatgatgaggaaaacctga
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