Salmo salar (Atlantic salmon): 106585055
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Entry
106585055 CDS
T04363
Symbol
polb
Name
(RefSeq) DNA polymerase beta
KO
K02330
DNA polymerase beta [EC:
2.7.7.7
4.2.99.-]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
106585055 (polb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106585055 (polb)
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
106585055 (polb)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
106585055 (polb)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
X-family DNA polymerases
106585055 (polb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B_palm
DNA_pol_B_thumb
HHH_8
DNA_pol_lambd_f
HHH_5
Cactin_mid
HHH_2
NTP_transf_2
DUF4806
Cdd1
Motif
Other DBs
NCBI-GeneID:
106585055
NCBI-ProteinID:
XP_014026285
UniProt:
A0A1S3PF96
LinkDB
All DBs
Position
ssa24:13939284..13946133
Genome browser
AA seq
336 aa
AA seq
DB search
MSKRKAPQESPNEGITDFLTELANYERNVNRAIHKYNAYRKAASVISKYPQKIKNGEEAK
KLDGVGKEIAKKIDEFLQTGTLKKLEKIRNDDTSSSINFLTRVTGIGPAAARKFFDEGVK
TLEDLKKIEHKLNHHQQIGLKYFEEFEKRIPRSEMTKMETLILQELELVDTEYIGTICGS
YRRGAESSGDIDILLTHPNYTSVDEKQPKLLHAVVEHFESIGFITDTLSKGDTKYMGVCQ
LQQNDEGEEEYLHRRIDIRLIPKDQYYCGVLYFTGSDIFNKNMRTHALEKGFTLNEYTIR
PVGVTGMAGEPLMVDSEKDIFDYIQWKYREPKERSE
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaaaggaaagcgccacaggaatccccaaacgagggaataacagactttcttacc
gaattggccaactatgagaggaatgtcaacagagctatacacaagtacaatgcctacagg
aaagcagcttcagtgatctccaagtacccccagaagatcaaaaatggggaagaggccaag
aaactggatggcgttggaaaagagatcgctaagaagatagatgagtttttacaaacagga
acacttaagaagttagaaaagattcgtaatgatgacaccagctcctccatcaatttcctt
accagagtcactggtattggtcctgctgctgccagaaagttctttgatgagggagtgaag
actctggaagatctgaagaaaatcgaacacaagctcaatcatcatcagcagattggactc
aagtactttgaggagtttgagaagaggattccacgatctgagatgacgaagatggagact
ctcattctgcaggagctggagttggtggatactgagtacattgggacaatctgtggaagc
tacaggagaggtgctgaatccagtggggatattgatatcttactgacccacccaaactat
acctctgtggatgagaaacagcccaaacttctccatgccgtggtggagcattttgaatcc
attgggttcattacagacacactgtccaaaggagacaccaaatacatgggagtctgccag
ctgcagcagaatgatgaaggtgaggaggaatatcttcacagacgcattgatatcaggtta
attcctaaggaccagtattactgtggtgtgctgtatttcactggcagtgacatcttcaat
aagaacatgagaactcacgctctggagaaaggcttcaccctcaatgagtacaccatccgt
ccagtgggggtcactggtatggctggggaacctctgatggtggacagtgagaaggatatc
tttgactacatccaatggaaatacagagagcccaaagaacgcagcgaatga
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