Salmo salar (Atlantic salmon): 106585690
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Entry
106585690 CDS
T04363
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting 13 homolog A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sasa04131
]
106585690 (vps13a)
Membrane trafficking [BR:
sasa04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
106585690 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
DUF5764
Motif
Other DBs
NCBI-GeneID:
106585690
NCBI-ProteinID:
XP_014027654
UniProt:
A0A1S3PJV1
LinkDB
All DBs
Position
ssa24:30870282..30935135
Genome browser
AA seq
3255 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDTSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDVTNPKCPLSFGMSLQ
NLSLQTADENWKPCLLNEKAKLFFKLVQLDNLFAYWNVNSTLYSNHMPDEALRCLQNSMD
IYSSTPMKHDFIFRPITANAKLSMNPRSDVNFSSPKVDLVVNLREVAVELNRPQYISILE
LLGSVDMMSRNLPYRKYRPQFHVHTNAYIWWQYVITGIMEVDVKPRLHMWSWQRIHHHRH
TVKRYRALYKSKITNKKPTEKLLREVEETERTLDIFNITLARQQAEMEASKAGLRIFRPG
VKVEEESQGWLGWMWSGWSGDDGAKSKEVKTGAFGELMTPAEKAKLYTAIGYSEVAVNHN
LPKNFEDIKIHFHMKRMSFSMKDNKDQNEILKVTVEDLKSMLTQRPGAQAIKLSAKLSLF
EVKGLANNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLHVESQPLEIIYDAV
TVNSMSAFFLPPDDLQLDELTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSRKGLPQLSVGRRTIQDIMSQAYDSFNIKLSSL
QFLYSEPDGDWRKARKMKQSALHILEPVDVKVVFSRAMVVTDSRMPKFKIFGEMPLLSLR
ISDDKVRAVLELINSIPLPESRPAPRRPNTHSTPKAAKQSYTPQLTPRQPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDSPFFPNNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMMFE
INKLSVQLCRLARGQEVTVLHLDVERLGTELKIRTFDMTSNTFLHEICLECSEYMDSEEK
KVHLITTLDNTEEDLLTLEYTKADKNGPEFKSQYKNTEQSVTVNFSSLDVHLHTEALLNA
MNFLNSLLPPTKEAVPSKEELPTIPEEDEGEGEEGEKEESAVAKRTSSKKSKFEDVVNLH
IRADLNCLKVFIRGQSHMIAEIRIEGLVSEVLMRRKAVEVLANLKNIVILDCDKEALYKQ
CVSIADKEVFAFRMVNHTDATEGDAYLDMGKVDTSISLTVGCIQVIFLNKFVSSILAFIN
NFQAAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFKAPLVFLPQSSSSTNVTVAD
LGMVTVKNCFALVDSQTHVKIPPIIDTMTVGLSDLKMYRTTFEKGRFQGEIQVLKPVNLD
LSIQRNLSASWYHSIPDIKITAHLKPMNLILSQDDMTVVLRTLGENMSETSDAASPRPPP
STVDRSDTATTKGSQGTGGNIVVTAAVVETQTSTKLKNTLKVDFKFDSMTLVLYSPNGTE
VQVLDSRDDQLMLAEFTLGTISTSVHMFSDGSMKASVKLTDCLLDDKRRRVKNITARMMA
IRPSAERNVMVEVNYNQGREGTSLETVVQDVYLCASMEFLLTVADIFLKASQQGFSSAAP
KNSSTKPTVTATAASKEPAPVAVKSEMNVLVKNPEIVFVADLTRADAPALVMTMECELVM
KSNPDGQLMTAVVKDLKVVACPFLREKRRNKETTVLQPCQVFFKSTQSSTSPQAMEVSIK
ALTLKVSPIIINTVITIQSVLSPAGADMPQSELESPVPPDLWERRSWQDLKLWFLEEEGK
DEDAQSLVRLIPQGESLQVAISSICLTLEAGVGHRTVPMLLAKSSFHGDVKNWSTLINLH
SQLNLEVHYFNEVMGVWEPLLEPLEDEIRDSFRSWTLGLKMKKKPVKYSGISDEVDCSIP
DYKTIISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQTSECFQEDEAPFVVKNHLGLT
VSVVYSDMFCPLGREATENRVELQNGESVNMDYRRTTTHSDQFSAMTSLVAKDYYIQPTP
VGHTSASVIPLIKVGRGMYSVMHKVSGVTRFLVCQIYSVQGSKHIKIRSPFQIINHFSIP
FRVMEGSTCLGISLPTEEFCVPLDSYRSKLSLQPVTEGDNQYDSSEGFSYESVSQQPGAR
VQQTCHRHGNSASMLMVNIVPLKDTVTSQHTGVAGEHFDEPYILHLWPSVLLRNLLPYPI
TYRLQDSEEPAPITLINGHSAELHTAVMDLSSLELHLLNYLGQDWKAHYGLRGDQDEITF
IVFRSLRDEEEEVRLGEGGERKRAELDIAVHVKYDAGLTEVAIHSPYWMVNKTGRLLQYK
ANDIHRKHAMDYDMPLLFSFKPRNFLHNNKVRLMISDSELSDDFSLDTVGSYGEVKCKGR
LKDYLIGVKIDPSSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDHWTKARPHQAAIPFW
PEKDSKMLKIKVEGCLSTPQTMDFTKPENCLLLHLDNTLGGVIVDVNLSDHSIIICFSDY
HDGAAPFLIINHTQEQTLEFYQRLRRDSSKCVTDELLELSFSLEETQRSSQKEKDKLSPG
KAVYYTWAEPTGSRSLAWQCGSYSGELKSEEDLRLDVNEEGKLYLISFYEGLQRVALFTE
DRRIYKLLCESEKAELAEQEIILSLQDVGISLVNNSSHQEVSFIGITSSDVVWEFKPKKK
SRWKPLSLKYAAQLETHFREYTESESVDNTILDLESNFQVSLTPNRQDMRMMKPYDAPIR
RNFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPGAIFPYVFYPIKLPKSVTMDSEPKPL
TDISIVTRAAGHSDISRIKYFMVLIQEMDLKLDLGFLYAILDLFTPETASVMTSEQMVEL
FEKDIEYLKTELNNISAADTSPISLYEYFHISPIKLHLSLSLSSGGEDGNKEKRETEVIP
VQSLNLLLKSIGATLTDVQDVVFKLAYFQLTFQFRTRQQLQWEVIRHYSKQAIKQMYVLV
LGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGA
ASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSGLREGLTRGGKGLVSGFVSGITGIVT
MPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRAAETSQDVESLRPP
RFIHEDGVIRPYKEREGVGSQMLQKIENGQFAKYRYFAHAKVNESDYLMITKSGIFFVTK
GTFGQLTCEWQYLFDEFTKKPMIVEGRRLRIEAKERVKSVFHAKEFGKIINFKSPEIAEW
VLTKLEDARESLHKY
NT seq
9768 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttctgggggactacgttgtg
aaccttgacacctcacaactcaagctcgggatttggggaggtgatgctgtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagccgga
catataggacgcttggagctgaagattccatggaagaatctgtacacccagtcagtggaa
gctacactggatggagtttacctgctcatcgtgcccacagccagtataaagtatgatgca
gagaaagaggagaaacagcttcaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcggaacaagaaaaccctgcacttgagaaacaagacacctttgtg
gagaaactggtgacacaggtgatcaagaaccttcaggtgaagatctccaacatccacatc
cgctatgaggatgacgtcaccaatcccaaatgcccattatcatttggaatgtctctacag
aacctcagccttcagacagcagatgagaactggaaaccttgtcttctgaatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcctactggaacgtgaactca
acgctgtactccaatcacatgccagacgaggccctaagatgcctccagaacagcatggat
atctacagttccacccccatgaaacacgatttcatttttcgtccgataacggccaatgcg
aagctgagcatgaacccccggtcagatgtaaacttctcttcacccaaggtagacttggta
gtaaacctgagagaggtggccgtggagctgaacaggccacagtatatcagcattctggag
ctcctgggctcggtggatatgatgtcacgcaacctgccgtacaggaaataccggccgcaa
ttccacgtgcacaccaacgcctacatatggtggcagtatgtgattacgggcatcatggag
gtggacgtgaagccacggctgcacatgtggtcgtggcagcgcatccaccaccaccggcac
acagtcaagcgttacagagcgctctacaagtccaagatcaccaacaagaagcccactgag
aagctgctcagggaagtggaggagactgagcgaactctggatatttttaacatcacgctg
gccaggcagcaagctgagatggaggcgagcaaggcgggtctgcgtatctttcgtccgggg
gtgaaggtggaggaggaatcccagggctggttgggctggatgtggtccggctggtcagga
gatgacggcgccaagtccaaggaggtcaagactggagcttttggtgagcttatgactcct
gccgagaaggccaaactctacaccgccattggctacagtgaggtagctgtcaatcacaac
ctgccaaagaactttgaggacattaagatacattttcacatgaagagaatgtctttctca
atgaaagacaacaaggatcagaatgaaatcctcaaggtcacagttgaagacctgaaatcc
atgctgacccagaggcccggagcacaagccattaaactgtcggccaagcttagtctgttt
gaggtgaaaggactggccaataatcggcctgcgcccacgctgctgtcgtcaaggaaggct
gccacggtaacagggacccccctgcttgacattctgtttgagaccaaccctctggatgag
agtgctgaccagcggctccacgtcgagtcccagcctctggaaatcatctatgacgctgtg
acggtgaacagcatgtctgcgttcttcttgccgcctgatgacctccagctagacgagctg
accaacgccactctcatgaagctggaacagttccgagaccgcacctccacggggctgatg
tacgtgattgagacccagaaggttctggatctgaacgtcaacctcatggcctcctacgtg
atcgtgccccaaaccggcttctacgactccacccagaacctcatgctattggatctgggt
cacttcaaggtgtcaagtctgagcagaaaggggctaccccagctctctgtagggagaaga
actatacaggacatcatgtcccaagcctacgacagcttcaacatcaagctcagcagccta
cagttcctctacagcgaaccagacggggactggaggaaagcccgtaagatgaagcaatcg
gccctccacatcctggagcctgtcgatgtcaaggtggtgttcagcagagccatggtggtc
acagactcacgcatgcccaagtttaagatcttcggggagatgcctctcttgtctctgagg
atctctgatgataaggtgcgggccgtgctggagctgattaacagcatcccgctgccggag
agcaggccggcgccgcgccgcccaaacacacactctacacctaaggctgcaaagcagtca
tacacccctcagctaacccccaggcaaccaaccatggctgaactgcgaaactccctcata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggcgac
agtccgttcttccccaacaacatgcccagccccctgcagcgctccgactcggtcaagagg
agaggactggtcaagaaagaccccaagaagaacatgacagagttcctcatgatgtttgag
atcaacaagctgtctgttcagctgtgtcgtctggctagaggtcaggaggtcacagtgtta
cacctggacgtcgagcgtctcggcaccgagctaaagattcgcaccttcgacatgacatct
aacacctttctacacgagatctgcctagagtgctcagagtatatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggaggacctcctcacattggagtac
actaaggctgataagaacgggccagaattcaagtctcagtacaagaacactgaacaatca
gtaacggtgaacttctcatctctggatgtacacctgcacacggaggctttgctcaacgcc
atgaacttcctgaacagcctcctccccccgaccaaggaggcggtgcctagcaaggaggag
ctgcccacaatcccagaggaggacgagggagagggggaggagggcgaaaaggaggaatcg
gccgttgcaaaaagaacatcttctaagaagtcaaagtttgaggacgtggtgaatttgcac
atcagagctgatctcaactgtctgaaggttttcatccgaggccagagccacatgatagca
gagatccgcattgagggcctggtgtcggaggtgctgatgaggagaaaggcggtcgaggtt
ctggccaacctgaagaacatagtcattctggactgtgataaggaggcactgtataagcag
tgtgtgtccatagctgataaggaggtgtttgctttccgcatggtgaaccacacggacgcc
actgagggcgatgcctatctagacatgggtaaagtggacaccagcatctccctgacggtg
ggctgcatccaggtcatcttcctcaacaagtttgtctcttccattctggccttcatcaac
aatttccaggcggccaaggaggccctggctgaggtgacggtgcaggcagcggaaaaggca
gccacgggggtgatggagcttgctgagcgcagcacgcgcatctctctggatgtagacttc
aaagctcctcttgtcttcctgccgcagtcatcctcctccaccaacgtcactgtggctgac
ctcggtatggtcacggtcaagaactgcttcgccttggtcgactcccagacgcatgttaag
atccctcccatcatcgacaccatgaccgtgggcctcagtgacctgaagatgtacagaacc
acctttgagaaggggagatttcagggggagatccaggttctgaagccggtcaacctggac
ctgtccatccagaggaacctgtcagcctcctggtaccacagcatccctgacataaagatc
actgcccacctcaaacctatgaatctgatcctgagtcaggatgacatgacggtggtgttg
aggactctgggtgagaacatgtcagagacgtcagacgctgcttcccctcgtcctcctccg
tctacagtggaccgctccgacactgccactaccaaaggctcgcagggcacaggaggcaac
atagtggtaactgctgcagtggtggagacccagacgagcactaagctgaagaacacactc
aaagtagacttcaagtttgactccatgactctggtcctgtacagccccaatgggactgag
gtgcaggtgttggactccagggatgatcagctgatgctggctgagttcaccttgggaact
atctctacatctgtccacatgttctcagacggatccatgaaggcctccgtcaaactcaca
gactgcctgctagacgacaagagacgcagagtcaagaatatcactgccaggatgatggcg
attcgtccgagcgctgagaggaacgtgatggtggaggtgaactacaatcaggggcgtgaa
ggcacctctctggaaacggtggtgcaggacgtctacctctgtgccagcatggagttcctg
ctcaccgtggccgacatcttcctcaaggccagccaacagggtttctcctcagccgccccc
aagaacagcagcactaaacccacagttacagccaccgccgcttccaaggaacctgcccca
gtggcagtcaagtcggagatgaatgttctggtgaagaacccagagattgtctttgtggct
gacctgacgcgtgccgacgccccagccctggtcatgaccatggagtgcgagctggtgatg
aagagcaacccggatggtcagctgatgacggcagtggtcaaggacctgaaggtggtggcc
tgccccttcctgagggagaagaggaggaacaaggagaccactgtgctgcagccatgccag
gtgttcttcaagagcacacagtcctccacctccccgcaggccatggaggtctccatcaag
gcactgacactcaaggtgtcgcccatcatcatcaacacagtgatcaccatccagtcggtg
ctgagcccggccggtgcagacatgccccagtcggagctggagagccccgtgcccccagac
ctgtgggagcgccggtcctggcaggacctcaagctgtggttcctggaggaggagggtaaa
gacgaggatgcccagtccctggtccggctgattccccagggtgagtccctgcaggtggcc
atttcctccatctgcctgaccctggaggctggggtgggccaccgtaccgtccccatgctg
ctggccaagtcctccttccacggggacgtcaagaactggagcaccctcatcaatctgcac
agccagctcaatctggaggttcactacttcaacgaggtgatgggggtgtgggagcctctg
ctggagcccctagaggacgagatcagagacagcttcagatcctggactctgggattaaag
atgaagaagaagccagtaaagtactccggtatatcagatgaggtggactgcagcatccca
gactacaagactatcatcagcatcagcagcaaggaccagctcaacatcaccctctctaag
tgtggactgggcatgctcagtaacctgggcacggcctttgcggaggcggccaagcagaca
tcagagtgtttccaggaggacgaggcgccgttcgtggtgaagaaccatctgggtctgact
gtgtcagtggtgtacagtgatatgttctgccccctgggccgtgaggccacagagaaccgt
gtagagctgcagaacggagagagtgtcaacatggactaccgtcgcaccaccacccactca
gaccagttctctgccatgacctcgctggtggccaaggattactacatacagcccactccc
gtgggccacacttcagccagcgtgattccgttgatcaaagtggggcgtggcatgtacagt
gtaatgcacaaagtctctggggtcacccgcttcctggtctgtcagatctactctgtgcag
ggaagcaagcacatcaagatccgctctcccttccagatcataaaccacttttccatcccg
ttcagagtgatggagggctccacgtgtctggggatctcattacctacagaggagttctgc
gtgcctcttgactcctacaggtcaaagttgagcctgcagccggtaaccgaaggagacaat
caatacgattcttccgagggcttcagctacgagtcagtgagccagcagcctggtgcacgt
gtacagcagacctgtcatcggcatggcaacagcgccagcatgctaatggtcaacatcgta
cctctgaaagatacagtgacatcacaacacacgggagtggccggggagcactttgatgag
ccctacatcctgcacctgtggccctccgtcctgctccggaaccttctgccttaccccatc
acctatcgcctacaggacagtgaagagcccgcccccatcacactgataaacggccactca
gcagagcttcacaccgctgtcatggacctgtccagcctggaactccacctcctcaactac
ctggggcaggattggaaggcccactatggtctccgtggcgaccaggacgagatcaccttc
attgtgttccgctccctgcgcgatgaagaggaggaggttaggttaggggagggtggagaa
aggaagcgggcagagctggacattgcggtgcatgtgaagtatgatgcgggcctgactgag
gtggccatccattctccctactggatggtgaacaagacgggtcgcctgctgcaatacaag
gccaacgacatccaccgcaaacacgccatggactatgacatgcccctgctcttctccttc
aagccacgcaactttctgcacaacaacaaggtgcggctgatgatctcggacagcgagctg
tctgatgatttctccctggataccgtgggtagctatggtgaagtgaagtgcaaagggagg
ctcaaagattacctgatcggggtgaagatcgaccccagcagtttcagcctgacccgtatc
gtgagctttgtgccgtactacctgttggtgaacaggaccaagcatgtgatctgggtggga
gaggagggccaggaccactggaccaaggccagaccacaccaggcagccatcccattctgg
cccgagaaggactccaagatgctcaaaatcaaggtagaaggctgtctgtcaacccctcaa
accatggacttcaccaaaccagaaaactgcctgttgttgcacctggacaacactctgggc
ggagtcattgtggacgtgaacctatcagaccactcgatcattatctgtttttcggactac
cacgatggagccgcccccttcctcatcatcaaccacacccaggagcagacgctggaattc
taccagagattgcggagagactcgtcaaaatgcgtgacagacgagctgctcgaactctcc
ttctcactagaggagacccagcgcagcagtcagaaggagaaggacaagctgagccctggg
aaggccgtgtactatacctgggctgagcccaccgggtcacgctccctggcctggcagtgt
ggcagctacagtggcgagctgaagagtgaagaggacctgcggttggacgtgaacgaggag
ggtaagctgtacctcatctcgttctacgagggcctccagcgagtggcgctgttcaccgag
gacaggcggatctacaagctgctgtgtgagagtgagaaggccgagctggctgaacaggag
atcatcctctccctgcaagacgtgggcatctccctggtcaacaacagcagccaccaggag
gtgtccttcattggcattaccagttcagacgtggtgtgggagttcaagccaaagaagaag
tctcgctggaaacccctgagtttgaaatatgcagcgcagctggagacccacttcagagag
tacaccgagagtgaatcagtggacaacaccatcttagacctggagagcaacttccaggtg
tctctgacgccaaacaggcaagacatgaggatgatgaagccatatgatgctccaatcagg
aggaacttccttccaggggtgaaggtggagtacagcgtatcggcgcgccagagtgcctac
cgtgtgcagatcaaccgcatacagatccagaatcagctgcctggagcaatctttccctat
gtcttctacccaataaaactaccaaagtctgtcaccatggactcagagcccaaacctctg
accgacatcagtattgttaccagggcagccggacactccgatatctcccgcatcaagtat
ttcatggtgctgatccaggagatggacttgaagttggacctgggtttcctctacgccatc
ttggatctgttcaccccggagacggccagcgtgatgacatcagagcagatggtggagttg
tttgagaaggacattgagtatctcaagactgagctgaacaacatctcagccgctgacacg
tcccctatcagtctctatgagtacttccacatctctcccatcaagttgcacctgagtttg
tctttgagttctggaggagaggatggtaataaggagaagagggagaccgaggtcatccct
gtccaatccctcaatctgctgctgaagagcatcggagcaaccctcactgacgtgcaggac
gtcgtcttcaaattggcctatttccagctgacattccagtttcgcactcgccagcaacta
caatgggaggtcatcagacactactcgaaacaggcgataaagcagatgtatgtgctggta
ttgggcttggacgtgctgggaaacccctttggacttatccgaggtctgtctgagggagtg
gaggctttcttctatgagccctatcagggagctatccagggaccagaggagtttgtggag
ggtatggcgctgggggtgaaggcactggttggaggagcagtggggggcattgcgggcgct
gcctccaggataacaggcgccatggcgaagggtgtggctgccatgacgatggatgaggaa
taccagcagaagagacgagaggctatgaacaagcagcccagcggcctaagagagggcctg
actcgtggaggcaaaggactggtctctggcttcgtcagtgggatcacagggatcgtcacc
atgcccattagaggtgctcagaaggagggtgcggcaggcttctttaagggtgtcgggaag
gggctggtgggggctgtggccagacccacaggaggtatcatagacatggccagcagcact
ttccagggcatcaagagggcggctgagacgtcccaggatgtggagagtctgcgtccacct
cgcttcattcacgaggacggggtcatccgaccatataaggagagagaaggcgttggcagc
caaatgctacagaaaattgagaatggacagttcgccaagtacagatactttgctcacgcc
aaagtaaacgagtctgattacttgatgatcaccaaaagtggaatctttttcgtgaccaaa
ggcacatttgggcagcttacctgtgagtggcagtatctgtttgacgagttcaccaagaag
cccatgatcgtggaggggaggaggcttcggatagaggcaaaggagagagtaaagtctgtg
tttcatgccaaagagtttgggaagattataaacttcaaaagtccagaaatagccgagtgg
gttcttaccaagctggaggacgcccgggagagtctacacaaatactga
DBGET
integrated database retrieval system
