Salmo salar (Atlantic salmon): 106585756
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Entry
106585756 CDS
T04363
Symbol
ttc37
Name
(RefSeq) tetratricopeptide repeat domain 37
KO
K12600
superkiller protein 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106585756 (ttc37)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106585756 (ttc37)
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
106585756 (ttc37)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_16
TPR_8
TPR_14
TPR_19
TPR_17
TPR_11
TPR_9
TPR_12
TPR_CcmH_CycH
ANAPC8
PPTA
ANAPC3
TPR_EMC2
HAT_PRP39_N
Motif
Other DBs
NCBI-GeneID:
106585756
NCBI-ProteinID:
XP_014027809
UniProt:
A0ABM3DUW2
LinkDB
All DBs
Position
ssa24:34964706..>34990472
Genome browser
AA seq
1568 aa
AA seq
DB search
MSNKEVKSALKNARDAIKNKEFKEVLKHCKAALKLEKNNYNAWVFIGVAASELEQPDQAQ
TAYRKALELEPEQLLAWQGLANLYEKSDQMDFKAELPKVYLKLIELYESSDKTKCYEVIR
KLADIFHMEKDYLQVARVWRRLIQLKEGEGADKAELLQLWQQMTCLLSDSMEEHDNETQQ
HLIAAFEKAMVLSDNVPGEDHRKLSADYLKCLSQLSHEECKMREACESILALYPSQTFPL
EILGAHHLKSGVCSEDAGRCFSRLLELDPDSGLGHLGLGIRALEEGKCDDSIKYLAQGLK
RMRSSLVGWCSLAQAQLKMHRYSDCATSCSQGLKLGGAGEEALRQKLLRLRLEALVRTGD
EHTADQALESLSQLLDANNDPVLVALKGRAYLQKGQVDQVLQVSTELLNSHPDLAEGLAL
RGLAHIAQGHHQLAEQSLLQAAAQNPACGEYYFLLGRLYWDMGEESRRDRSKAHTHLLKA
AKLDPYLGSVFCYLGHYYREVARDQGRARGCYKRAFELDSNDAESGAASVDLSMKEGDMD
TALAVLQSVIQRATPGSAKWAWMRRGLYHLKVGQHPQACADLQAALRADPQDWVCWECLG
EAYLNRRSFTSALKAFAKAQLLNPSSIYSLYQTAAIKQTLGKFKEAAAEYLQIIAREDYV
PALKGLGECLLSLARGLMEDYRDGGAIDVIQQAIQYLFRAVELRPDLSCLWKLLGDACTS
VSTVAPNRARVVVPGPLAGLQPPDQGHLLNQGHTLRVGERCYGRALKLMPESSSLWYDLG
LNYYHQACLPPCLQEMEHNTLLLLLEKALQCVKKAIMLNSSNHSYWNALGVVAMSKGLEN
YALAQHSFIKSVQVEPNNVVAWTNLGALYLKKDSVELSHEAFKIAQSLEPLYVNCWIGQA
LIAEMVGSYDTMDLFRHTTELSTHTEGVKGYAYWVCATLLDKSNRDSELYRYNIVQMNAV
SAAQVALSKYTERIQTDPDAFVMLGFLNEHLQLKKQAVLAYQRAVELLQAMPSVELLAFS
LGSYGRALCNTGQWEEAVRVYSSTSLEVLHDLAGLALAYCRAGLIPESISAYEKALMVAT
TEKEKAYILTSLALLQHRLGNMDSAKTLLFKCSMLKEPVPESLLCLCALGLVHGDSTLAS
AALTELLKQGRATGAAVEQRCLLTCTLLALQGNFSAVQREASRAVHSNPGNPSLWALLSR
LVPQYYPRKAEGGAVAGHVACLSSMTQGKRALLYSGVNQLACGRHSGEDHSRNALKTMQR
AVLLCPDDPAMWAGLMAACHTENTACSLSGSTPGRRGLEQVLMAVVSEKVRNVEEVEQPL
AQALEGWVLQQAVTGLTSGGQLEQAEALCSQVLSVSPEHPAVVLLLRQVQCEHLLLSSVG
TALPASVLEQLSSAVLANHTSVAAWHWLAEVYRTQGLLVQAVMAYRQSLQLASQLDLHSG
KMACLLRLALLALSLCMAKVPGDEWKELVLEATTEALKLGPSPVALLVQALLHFATKMGA
RETRRLLERLVYFPSQGCPETVACVARWYLLRHLHAKDDLELMDTLVDDAKASGDGRLLE
FHTRLTSC
NT seq
4707 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacaaagaagttaaatcagctctaaaaaatgccagagatgccataaagaacaag
gaatttaaagaggtgctaaaacactgcaaggctgccctgaagctagagaagaacaattac
aatgcctgggtgttcattggtgtggccgcgagcgagctggagcaaccagaccaggcccag
acagcctacaggaaggctctggagctggagccagagcagctgctggcctggcagggatta
gcaaacctgtatgagaaaagtgaccagatggatttcaaagcagaactacccaaagtctac
ctgaaactcattgagctttatgaaagttcagacaaaacaaaatgttatgaggtgatcaga
aaactggcagacatcttccacatggagaaggactatttacaggtggccagggtgtggcga
aggctgattcagctgaaggaaggagaaggtgctgacaaggcagagctgctgcagctatgg
caacagatgacctgccttctctcagacagcatggaggaacacgacaatgagactcagcag
cacttaattgcagcctttgagaaggccatggttctctccgacaatgtgcctggcgaggac
catcggaagctctcagctgactacctcaaatgcctttcacaactttcgcatgaagagtgt
aaaatgagagaggcctgtgagtccatattggccctctatccctcacaaacattccctttg
gagatcctcggtgcacatcatctcaagtcaggggtctgcagtgaggacgcgggccgttgt
ttctcccgtctcttggagttggacccagacagtggcttaggccatctgggtttgggcatc
agagctctagaggagggaaaatgtgacgactccattaagtacctggcccaaggactgaaa
cgaatgcgctccagcttggtaggctggtgcagccttgctcaggcccagctgaaaatgcac
cgatattccgactgcgcaacatcctgctcccaaggtctgaagctgggtggggctggagaa
gaagcactgcgacaaaagctcctgaggctgagactagaggcccttgtgaggactggggat
gagcacactgcagaccaagccctggagagcctctcacagcttttagatgctaacaatgac
cctgtcctggtagccttaaaaggaagagcgtatttgcaaaaaggccaagttgaccaagtg
ctccaggtgtccacggagctgctgaactctcaccctgacctggctgagggactggcgctg
aggggactggcacacattgcacagggccatcaccaactagcagaacagagcctcctgcag
gctgcagcccaaaacccagcctgtggagagtactacttcctgttggggcggctgtactgg
gacatgggggaggagagtcgcagggacaggagcaaggcccacacccatctactgaaggct
gccaaactggatccatacctgggctctgtgttctgctacctgggccattactaccgggag
gtggccagggaccagggtcgagccaggggctgctacaagagagcctttgagctggacagc
aacgacgcagagtccggggctgcctctgtggatctgagcatgaaggagggggacatggac
actgccctggctgtgctccagtcagtgatccagagagccacccctggttcagcaaagtgg
gcctggatgagacgaggcctctaccacctgaaggtgggccagcacccccaggcctgtgca
gatctgcaggctgctctgagggctgacccccaggactgggtgtgctgggaatgtctgggc
gaggcctacctgaaccgccggagcttcacgtcggccctgaaggcctttgccaaggcccag
ctgctcaacccctcctccatatacagcctctaccagactgctgccatcaaacagaccctg
ggcaagttcaaagaggctgctgcagagtacctgcagatcatagcccgggaagactatgtg
cctgcactcaaaggccttggggagtgtctgctgtccttggccagaggcctgatggaggac
tatagagatggaggagccatagacgtcatccagcaggccatccagtacctcttcagggct
gtagagctgcgtccagacctgtcctgtctgtggaagttactgggagacgcctgcacctca
gtcagcactgtggcccccaacagggcccgcgttgtggtgccaggacccctggccgggtta
caacccccagaccagggccaccttctcaaccagggacacaccctccgagtgggggagaga
tgctatgggcgtgctctgaagctgatgcctgagagctccagcctgtggtatgacctgggt
ctcaactactaccaccaggcctgtctgcccccctgccttcaggagatggagcacaacacc
ctgctactgctgctggagaaggccctgcagtgtgtgaagaaggccatcatgttgaacagt
agtaaccatagctactggaacgccctgggagtggtcgccatgagcaaaggacttgagaac
tatgcccttgcccaacacagcttcattaagtcagtgcaagtggaacccaataatgttgtt
gcctggacaaacctgggtgctttgtatctgaagaaagacagtgttgagctctcccatgaa
gcctttaagatcgcccagtctttggaaccactgtatgtcaactgctggattggacaggcc
cttattgcagagatggtgggcagttatgataccatggacctgttcagacacaccacagag
ctcagtacacacacggagggggtaaagggctatgcttactgggtttgtgccactctgctg
gataagagtaacagggactctgagctctatcgctacaacatcgtccagatgaacgcggtg
tctgctgctcaggtggctttgagcaagtacacagagcgtatccagacagaccctgatgcc
ttcgtcatgctgggtttcctcaacgagcacctgcagctaaagaagcaggcagtgctggct
taccagagagctgtggagttgctgcaggcgatgccttctgtggagttactggccttctcc
ctgggaagctatggccgggccctctgcaacacaggccaatgggaggaggcggtgcgcgtt
tactcttccacatctctagaggtgctccacgacttggcaggcctggcgctggcctactgc
agagcaggactcatcccagagagcatcagtgcctatgagaaggctctgatggtggccacc
actgagaaagagaaggcctacattctgacttctctggctctgctgcagcacagactgggg
aacatggactccgctaaaacactgctcttcaaatgctccatgctgaaggaacctgtgcca
gagtctctgctgtgcctgtgtgctctggggctggtccatggggacagcacgctggccagc
gcggccctcactgagctgctgaagcagggcagggccactggggctgctgtggagcaacgc
tgcctgctcacctgcaccctgctggccctgcagggcaacttcagcgctgtgcagcgagag
gcctccagggccgtccacagtaaccctggcaacccttccctgtgggccctgctttctaga
ctggtgccacagtattaccccaggaaggccgagggaggtgcagtggcaggccatgtggcg
tgtctctccagcatgacccaaggaaagagggcactgctgtacagtggagtgaaccagctg
gcttgtggcaggcactctggagaagaccacagcaggaacgccctgaagaccatgcagagg
gctgtgctgctctgccccgatgacccggcgatgtgggcggggctaatggctgcttgtcac
acagagaacacagcttgctccctctctggctccacgcctggcagacgaggcttggagcag
gtgctcatggccgtggtgtcagagaaagtgcggaatgtggaggaggtggaacagcctctg
gcccaggctctggagggttgggtgctgcagcaggcagtgacaggactgacaagtggaggc
cagctagagcaggctgaggccctctgctctcaggtcctgagtgtgtctcctgagcacccc
gctgtagtcctgctgttgaggcaggtgcagtgtgaacacctcctcctgtccagtgtcggt
actgccctgccagcttccgtcctggagcagctcagcagtgccgtcctagccaatcacacc
tcagtggccgcctggcactggctggcggaggtgtatcgtacccagggtctgctggtacag
gcagtaatggcctacagacaaagcctgcagctggcctcccagcttgacctccacagtggg
aaaatggcatgtcttctgcgcctagccctgctggccctcagcctctgcatggcgaaagtc
cctggtgatgaatggaaggagctggttctggaggcgaccactgaggctctgaagctgggc
ccctcccctgtagccctccttgtccaggccctgctacactttgccaccaagatgggcgcc
agggagacgaggcgtctgttggagaggctggtgtacttcccctcccagggttgcccagag
acggtggcgtgtgtggctcgctggtacctcctacgccacctgcatgccaaagacgacctg
gagctgatggacaccctggtggatgacgccaaagccagtggagatggcagactgctggag
ttccacacacggctcacctcttgctga
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integrated database retrieval system
