Salmo salar (Atlantic salmon): 106586023
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Entry
106586023 CDS
T04363
Name
(RefSeq) regulator of nonsense transcripts 3A-like
KO
K14328
regulator of nonsense transcripts 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03013
Nucleocytoplasmic transport
sasa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
106586023
03015 mRNA surveillance pathway
106586023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106586023
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
106586023
mRNA cycle factors
P-body specific factors
106586023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
PagP
RRM_1
Motif
Other DBs
NCBI-GeneID:
106586023
NCBI-ProteinID:
XP_014028283
LinkDB
All DBs
Position
ssa25:complement(798161..823766)
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AA seq
489 aa
AA seq
DB search
MRSEKDQMPRGRERSVVEIQFRDIPREHDAVFVNSKQKEEKKEVFTKVVIRRLPPNLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGSIEEDPEYCRFLENYSCDEKSMANPETLLGEIE
AKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRREMEKKRQREEEKRKRREEERR
KRKEADKLKKLSEKEIKIKLLKKSDRDDDMDSDRLKDKGDSGDTERAKWDKPSGQMKFKE
AKDKGQIDGDKGEHGRRQRDKDHRGRDEERKRQRHHYEFDKFIRRKEETKWGKGYCQDRA
KKDGHHHGSYSYCPSTGDKVGKEDREGIGASRKDCTWNKVSDKARVSQSVLAHQDRGTSQ
SEGPHQIGGALPNKDRPAMQLYQPGTRKCMGSASKGYELPSGQSPEHVAADHCYEAIAMG
TGSEKSSED
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgcccagaggcagggagagaagtgtcgtcgagatacaa
tttagagatattccgagggaacatgacgccgtctttgtcaactcgaagcagaaagaagag
aagaaggaggtatttactaaggtagtaataaggcgacttccacccaacctatccaaggac
cagctggaagaacagctcagtcctcttccatcctttgactactttgagttcttccctgca
gatcaaagcctctacccacacttgttctccagagcttacatcaacttcaaaaacccagag
gacatcctgctcttcagagaccgctttgatggctatgttttcattgataacaaaggccag
gagtacccagctgtggtagagtttgcgccctttcagaaagtatccaagaagaaactcaaa
aagaaagatgccaaagctggaagcattgaagaagacccagagtactgtcggtttctggag
aactactcctgtgatgagaagtccatggccaaccctgaaaccctgctcggagagatcgag
gccaagacaagggaactcatagccaaaagaacaacacctcttctggagtacatcaagaat
aagaaacttgagaagcagaggataagagaggaaaagagagaggagcgccgacgcagggag
atggagaagaaacgccagagggaggaggagaaaaggaagcggagggaggaggagagacgc
aaacgcaaggaggcggataaactgaagaagctgtcggagaaggagatcaagataaagctc
ctaaagaagagtgaccgggacgatgacatggactctgacaggctcaaggacaaaggggac
agtggggatacggagagggccaagtgggacaaacccagtggacaaatgaagttcaaggaa
gccaaggacaagggtcagatagatggcgataagggagaacatggccgcaggcagagagac
aaagaccacagaggaagagacgaggagaggaaacgacagcgccaccactatgagtttgac
aagttcatacggcgcaaggaggagaccaagtggggcaaaggctactgccaggaccgggcc
aagaaagatggccaccaccacggctcctactcctactgccccagtacgggcgacaaggtg
ggtaaggaggacagggagggcattggcgctagcaggaaggactgcacctggaacaaggtg
agcgacaaggctcgtgtctctcagtctgtgttagcccatcaggacagagggacgtcccag
tcagaggggccacaccagataggaggggctctgccaaacaaggaccgaccggccatgcag
ctctaccaacctggcactcgcaaatgcatgggctcagcgagcaaaggttacgagctcccc
agcggccagtcgccagaacacgttgcggcagatcactgctatgaggccatcgccatggga
acaggctcggaaaagagtagtgaagattag
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