Salmo salar (Atlantic salmon): 106586165
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Entry
106586165 CDS
T04363
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A-like
KO
K12821
pre-mRNA-processing factor 40
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106586165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sasa03041
]
106586165
Spliceosome [BR:
sasa03041
]
Complex A
U1 snRNP components
U1 related factors
106586165
Complex B
106586165
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
DUF4936
Motif
Other DBs
NCBI-GeneID:
106586165
NCBI-ProteinID:
XP_014028565
UniProt:
A0A1S3PLL4
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All DBs
Position
ssa25:complement(11385115..11422693)
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AA seq
891 aa
AA seq
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MSSDDNNGQSQAPSFAGVPPSGMPPPFMGPPGMPPHYPPMGMPPMGQRPPNMAPMPPGMM
PPGMMPPMGGPPMGQMPGMMPPMMPGMMMPPRMPAATMQPTGPPGVDTTVTAVPGTVGTT
NGSPQDDQPKNKSVWTEHKSLDEKTYYYNTETKQSSWEKPDDLKSPAEQMLSRCQWKEYK
SDNGKAYYYNSHTKESRWTKPKELEDLEAMIKAEENGMAEVGAPGTVITPNLQLDSAASM
ATMMMEIPAMRPATTVSVEQMSLVPMLVAEVNADSPVNSTEDLAGMEASASNDTSKEERP
ELVKKTYKWNTKEEAKQAFKELLKEKGVSSSASWEQAMKMIINDPRYSALPKLSEKKQAF
NAYKVQTEKEEKEETRIKYKESKETYQRFLENHEKMTSTTRYKKAEQMFAELDVWSTVPE
RDRLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNP
TFAEDEELQNMDKEDALICFEEHIRALEKEEEDEKQKTLLRERRRQRKNRESFQKFLDEL
HDNGQLHSMSAWMEMYPTVSSDIRFANMLGQPVYGVYSAGSTPLDLFKFYVEDLKARYHD
EKRIIKDILKDKNFLVEVNTSFEDFGTVISSDKRATTLDAGNIKLAFNSLLEKAEARERE
REKEEARKMKRKEATFKSMLKQATPALEPEATWEEVRERFLKESAFEDVTLESERKRIFK
DFMHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEGEDDYHTKKKKRSQSKSPS
ERSSSGESDRSYKKSKKHKKKGKKRRHKSQSPESEGERKEKGGRERDGKREKDQEKENDK
SRGKSRSESKQKSPKRKSTKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagatgataataatggccagagccaagcaccttcttttgctggggtcccaccc
tcagggatgccaccaccttttatgggaccaccaggaatgccgcctcattatccaccaatg
ggaatgccacccatgggacagaggcctcccaacatggctcccatgccacctggtatgatg
ccacctggcatgatgccaccaatgggagggccaccgatgggacagatgccaggcatgatg
ccacctatgatgcccgggatgatgatgccacctcgcatgccagctgcgacgatgcagcca
acaggaccgcctggagtggacacaactgtcaccgctgtgcctggaacagttggtaccaca
aatggctcgccacaggatgaccaaccaaagaataagtctgtgtggacagaacataagtct
ctggatgagaagacctactactacaacacagagaccaagcagtcttcctgggaaaagccc
gacgacctgaaatctcctgcagaacaaatgctgtctagatgccaatggaaggagtataaa
tcagacaatgggaaggcgtactactacaactcccacactaaggagtcccggtggaccaaa
cccaaagagcttgaagatctggaagccatgataaaagctgaggagaatgggatggcagag
gtaggtgctcctggcactgtcatcacccccaaccttcagctcgacagcgctgcttcgatg
gcgaccatgatgatggaaataccggccatgaggccagctacaaccgtctcagtggaacag
atgtccctggtgcccatgcttgtagctgaggtcaacgctgactcgcctgtcaactccaca
gaggacttggccggtatggaggcctcagccagtaatgacacctcaaaagaggagaggcca
gagctagtgaagaaaacgtacaagtggaacacgaaagaagaggccaagcaggccttcaaa
gagctcctgaaggagaagggcgtttcatccagtgcgtcttgggaacaagccatgaaaatg
atcatcaatgacccacgctacagtgctctgccgaaattaagtgagaaaaagcaggccttc
aatgcttacaaggtgcagacagagaaagaggagaaggaggagactaggatcaagtacaag
gagtccaaggaaacgtatcagcgatttttggaaaaccacgagaaaatgacatctacaacc
agatacaagaaagcagagcagatgtttgcggagctcgatgtgtggagcaccgtcccagag
agggacagactggagatctatgaagacgtcctgttctacctagccaagaaggagaaggag
caagccaagcagctgaggaagaggaactgggaggctctgaagaacatcctggacaacatg
gccaacgtgacgtaccgcaccacctggtccgaggcccagcagtacctgctggacaacccc
accttcgcagaggacgaggagctccagaacatggacaaagaggacgctctgatctgtttc
gaggagcacatccgagcgctggagaaggaggaggaggacgagaagcagaagacactgctg
agggaaaggaggagacagcgcaagaaccgagagtccttccagaaattcctggacgagctc
catgacaacggtcagctccactccatgtctgcctggatggagatgtaccccaccgtcagc
tcagacatccgcttcgccaacatgctgggccagccagtttatggtgtctattctgcaggc
tccactcccctcgatctgttcaagttctacgtggaagacctgaaggctcgctaccacgac
gagaagcggatcattaaggatatcctgaaggacaaaaacttcttggtcgaggtaaacact
agctttgaagactttggcactgtgatcagctcagacaagagagccacaacgctggacgca
ggcaacatcaagctagccttcaacagcttgctggagaaggcagaggctcgggagagggag
cgggagaaggaggaggccaggaagatgaagaggaaagaggccaccttcaagagcatgttg
aagcaggctaccccagccctggaaccagaggccacctgggaagaagtccgagaaagattc
ctcaaagaatctgcattcgaagatgtgactctggagtctgagaggaaaaggatattcaaa
gacttcatgcatgtcttagagcacgagtgccagcatcatcactccaagaccaagaaacac
tcaaagaagtccaagaagcaccacaggaagcgctcccgctctcgatcgggctcagagtct
gaaggtgaagacgattatcacaccaagaagaagaagcgctcacagtccaagtccccgtcc
gagcgctcctccagtggggaatctgatagaagttataagaagtccaagaagcacaagaag
aaggggaagaagaggcgtcacaagtcgcaatctcctgaatccgaaggcgagcggaaagag
aagggaggaagagagagggacggcaagcgggagaaggaccaggagaaagagaacgacaag
tcccgggggaagagtcgctccgaatccaagcagaagtcgcctaaaaggaaatctaccaag
gaggagggtggctgggacacttcaggcagcgagctgagtgaaggagagctggagaagagg
aggagaactctcctggaacagctggatgctccttga
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