Salmo salar (Atlantic salmon): 106586794
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Entry
106586794 CDS
T04363
Name
(RefSeq) ATP-dependent RNA helicase DDX3X-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
106586794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106586794
03041 Spliceosome [BR:
sasa03041
]
106586794
03036 Chromosome and associated proteins [BR:
sasa03036
]
106586794
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106586794
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106586794
mRNA cycle factors
Common to processing body (P body) and stress granule
106586794
Spliceosome [BR:
sasa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106586794
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
106586794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
106586794
NCBI-ProteinID:
XP_014029928
UniProt:
A0A1S3PQH9
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All DBs
Position
ssa25:40208402..40234069
Genome browser
AA seq
718 aa
AA seq
DB search
MSHVVVDNPHGLDQQLAGLDLNSDGQGGGTGRRYIPPHLRNKEVSKNENAYSSGRQSGYS
GPPPVNFYSPGGWDGGRSNGFTNGYHDNRNGGRGGPPRNDRGFGGGQDGGGWGSAPRQDA
AYNSFGGRGKSSFYSDRGSSGGRGGYQRGGYGGGGNNRWQEDSRDDEDWSKPSPANERLE
AELFSSGNTGINFEKYDDIPVEATGSNCPPHIDSFHDVDMGEIIMSNIALTHYTRPTPVQ
KYAIPVIKSKRDLMACAQTGSGKTAAFLVPVLSQIYTQGPGDAAAAAKNGQDSGKYGRRK
QYPLSLVLAPTRELALQIYEESRKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATP
GRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGIRQTMMFSAT
FPKEIQMLARDFLEDYIFLAVGRVGSTSENITQKVVWVEDGDKRSFLLDLLNATVIPSDA
PDVQEAAVTPGKESLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALNQFR
SGRCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDK
NSNITKDLLDILVEAKQEVPSWLESLGYENQHKGNTGRGRSKRFSSGGFGARDYRQTPGG
GGFGGGGRGGPRTGGHGGGSRGGFGGGGFGGGNSYGGNDAGYGGNYSHSGSGTDWWGN
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgataatccacacggtctagatcagcagcttgctggcctagac
ttgaactcagacggacagggaggaggcactggccggcgttacattccacctcacttgagg
aacaaagaggtttccaaaaacgaaaatgcatattcctctggtagacagagtggttattca
gggccaccaccagtaaacttctactctccaggaggatgggatggcgggcgcagcaacggc
ttcaccaacggttaccatgacaaccgcaacgggggacgcggcgggcctccccgaaatgac
agaggttttggtggtggacaagatggtggaggctggggaagtgctcccagacaagatgca
gcctataacagctttggagggaggggcaagtcttccttctacagcgaccgtggatcatca
gggggcagagggggttatcagcgtggagggtatggtggtggtggtaacaaccgctggcag
gaagactccagagacgacgaggactggtccaaacccagccctgctaacgaacgcctggaa
gcggagttgttctcaagcggcaacactggtattaactttgagaaatacgatgacattccc
gtagaggccactggctccaactgcccgccacacatcgatagtttccatgatgtggacatg
ggggagatcatcatgagtaacattgcgctgacccactacacgcggcccacccccgtccag
aaatacgctatccctgtcattaagtctaagagagacctcatggcctgcgctcagactggc
tcgggtaagacggcagccttcctggtgccagtgctgagccagatctacacacaggggcct
ggagatgccgcagcggctgccaagaacggacaggacagtggtaaatatgggcgccgtaag
cagtatcccctctccctggtcctggctcccaccagagaactggccctgcagatatacgaa
gagtccagaaagtttgcgtaccgctcccgcgtgcgtccctgcgttgtgtacggaggggct
gacatcggccagcagatcagagacttggagcgaggctgtcatcttctggtggccacacct
ggacgcctggtggacatgatggagaggggcaaaattggcctcgactactgcaactatttg
gtgctggatgaggctgacaggatgttggacatgggctttgagccccagatcagacgcatc
gtggagcaggacaccatgccccctaaaggcatccgtcagaccatgatgttcagcgctacc
ttccccaaggagattcagatgctggcgcgtgacttcctggaggactatatcttcctggct
gtgggccgcgtgggctccacctctgagaacatcactcagaaggtggtgtgggtggaggac
ggtgacaagaggtccttcctcctggacctgttgaacgctacagtcattcccagtgacgct
cctgatgttcaggaggctgcagtgacacctggtaaggagtctctgacattggtgtttgtg
gaaaccaagaagggagcggatgccctggaggacttcctgtaccgcgagggctacgcctgc
accagtatccacggagatcgctcccagagagacagagaggaggcgctgaaccagttccgc
tctggacgctgccccattctggtggccaccgcggtggctgctcgtggtctggacatctcc
aacgtcaagcacgtcatcaactttgacctgcccagcgacatcgaagagtacgtccaccgt
attggtcgtaccggtcgtgtggggaacctgggtctggccacgtcgttctttaacgacaag
aacagcaacatcaccaaagacctgctggacatcctggtggaggccaagcaggaagtaccc
tcctggctggagagcctgggttacgagaaccagcacaagggcaacacgggacgcggacgc
tctaagaggttttcctctggtggatttggtgccagggactaccgccagacgcccggcggc
ggtggctttggtggtggtggacgcggcggccctcgcaccgggggtcacggaggaggaagt
cgtggcggcttcggtggaggtggctttggaggcggaaactcctatggtggtaacgacgct
ggctacggtggcaactacagccactccggtagtggaaccgactggtggggcaactag
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