Salmo salar (Atlantic salmon): 106587198
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Entry
106587198 CDS
T04363
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106587198
03036 Chromosome and associated proteins [BR:
sasa03036
]
106587198
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106587198
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106587198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA
RRM_1
RRM_occluded
Mei5_like
THOC7
Motif
Other DBs
NCBI-GeneID:
106587198
NCBI-ProteinID:
XP_014030804
UniProt:
A0A1S3PSZ7
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All DBs
Position
ssa02:complement(47704190..47763768)
Genome browser
AA seq
2015 aa
AA seq
DB search
MEENTNKKQEKTKKEAAQKQAADLKTKVPEPAKPSPSPLHHPTTCVTLPQASHPPSSSSS
VRTNGKRAPPSTQQTPQQQTPPQPPSSSSGPRYPPREVPPRFRQQEHKQLLKRGQPLPAG
ALSSLTVTPASNPLTPGAPASSSSSAGKRHTDLPFQSGPGAQYENPHWGALPPATDRSST
TSSSWDQVIIDGSDTEAWPSISRSSDSRPANPSECATAADYTNPETSSNMSMAAGATSQQ
AHYPSLKANVTNVASMMQPGGGQGVGAIGSRGWGSGSGPITMAPTEGAKPDGLGPNMGRS
GRAPGWNSQSSFSLNLNPNANPSAWPVLGQEGAGDGPNPASLPPNGSLGNGSLGGDENNS
SSTWGGMMSPDAPSSNKNVSFSSMEHSNLNTEGQNSHHTKQPLSPIHGLPGWGGQSPTES
SQLNGDAGSSVWGNGDTKTSADSSSKNSGWDSAPSGGMSGWGHSGSGGGASGGGEGGWGG
DWGKPSSGEAKGGWDSSDGPAQDQQVSSWGQPIPAPTSEGSGSGGSEGRSHRRDRTGSED
GGPPPLPRQDLDPRVLCNTGWGQTPVRQHTSWEMEEQRAANERKTSEMRGGGGGDTWRGS
SPSSGSPPDPRNGGANPNLGPSQRPGSGGSGGKSEGPSGWGGPPPSGWGEQPVNKAPNGS
VSGWGEPMAQGHNTTNNGPKSGVQSWGVPEGKSSPTWDDGPAKTQQNQSQSWGEGPKSSH
GWGSGHGSGSRGSNGSNGSNGGEWREPAEVKKNGSSSHMWEGEGGNGREGGGWKDSTRGG
GGNGGGWASKPASAVGGGGWGETQHPNSPAPGWGSKPQESPNGPAPGWGSKPQESPNGPA
PGWGSKPQESPNGPAPGWGSKPQESPNGPAPGWGSKPQESPNGPAPGWGSKPQESPNGNS
GGVGTGGGSMGSWGGPASVRQSSNPGWGPGSSVAKPDPAMEPTGWEEPSPPSIRRKMEID
DGTSTWGDPSAYNKTVNMWDRNNPTGGNGNQGNNPTQPPTSKSNGGMAVNSHNHSSVPPS
NNNHHHMNHHHPHHGQPPPHSQHHGNNNGSPNTAAPHQGGGPQGRPPMANPGWGELPSVQ
QPKPEPAWGEPAGPSPAVDNGTSAWGKPPGVPGGWGDGGHGGHEPNGPYRRGNNGPSGPA
PCKPAPKSMQDGWGGGREEEMGMSSGQWDADAGDMWNSPASQESSSSCNSWGQPPKKGPP
KGKMGNQPDEAWIMNRLIKQLTDMGFPRDPAEEALKSNNMNLDQAMSALLEKKTELDKRG
MGMSDYNNGMNKPLGCRPQALSKDPSSDRSPFLDKDGGLSDDAPPSPFLPSPVSLKLPLV
NNLQPGLALGSPGLNMQNLNNRQMQSGMLGSSGAALSRAMQQQPPQPSVPPLGSSQPSLR
AQVPQFLTPQVQAQLLQFAAKNIGLNPALLTSPINPQQMTLLYQLQQLQMAYQRLQIQQQ
MMQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQLYQALLMKQQPPGSHSGLHPGQGK
SALDSFPGHPQAPGLSDLHTKEPQSSPNSYSPYPLSGLNPNMNVNCMEVGGLSMKEPPQP
QSRLSQWTHPNSMDSLSGNSSHMEANLNKHGAISAASNLGPPGKPPHMDDSYSPYSMMGG
SESPTSPLVPPDSWGQGPGKSPKDQITNGTNINWPPEFCPGVPWKGLQNIDPENDPNMTP
GSVPSGPTINTNIQDVNRYLLRDRSGGSSPPSPPQNGALPPSTDWPVSGCYTSSFSLSSP
DEECAGKLSDMKSTWSPGPISHPSQASLSHELWKVPQGPRNNTAPSRPPPGLTNPAKPSS
TWGGNSLGLAQGWSSSYTSEGTTWSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPL
ITFHLFLTQGNAVVRYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRYFAQGQQQL
PPTTSWQPNPGTNQTRMGGGGGSQQHAIGHHWSSGGGGLGGGAKTGGGGDLLWGGVPQYS
SLWGPPSGDDSRGVIGSPNPINTLLPGDLLSGESM
NT seq
6048 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaatacaaataaaaagcaagaaaagaccaagaaggaagctgctcagaaacag
gctgctgacctgaaaaccaaagtgccagagccagctaagcccagccccagtcccctccac
caccccaccacctgtgtgaccctgccccaggcctcacaccccccctcctcctcctcttca
gtcagaaccaatgggaagcgcgccccccctagcacccagcaaacaccacagcagcagacc
ccacctcagcctccgtcatcgtcctcaggcccccgctacccgccccgtgaggtgcccccg
cgtttccgccagcaggagcacaagcagctactgaagaggggccagccactgcccgccgga
gccctgagtagcctcacagtgacccccgcctccaacccgctcacccccggtgccccagct
tcttcctcctcctccgcaggcaagcgccacacagacctgcccttccagagtggtcctggt
gcccagtatgagaatccccactggggagccttaccaccagccaccgaccgcagcagcacc
accagtagtagctgggatcaagtgatcattgacgggagcgacaccgaggcctggccctcc
atcagtcgcagcagcgacagccgaccagcgaatccttcagaatgtgccacagccgctgac
tatacaaacccagagaccagcagcaacatgagcatggccgcgggggctactagccagcag
gcccactacccctctctcaaagctaacgtcactaacgtagctagcatgatgcagcctggc
ggtggccagggagttggcgccatcggcagcaggggctggggctccggatcaggccctatc
accatggctcccactgagggagccaaacccgacggcctagggcccaacatgggccggagt
ggaagagcacctggctggaactcccagtccagctttagcctgaacctgaaccccaacgcc
aacccctcggcctggcccgtgctggggcaagagggggctggagacggccccaaccccgcc
tcactacctcccaacggcagcctgggcaacggtagcctgggaggggacgagaacaacagc
agcagcacctggggaggcatgatgagccctgacgccccgtcctccaataagaatgtgtct
ttcagcagcatggaacattccaaccttaacactgagggacaaaacagccaccacactaag
cagccactcagccccatccacggcctgcctggctggggaggccagtctcctacagagtcc
tcccagctcaacggagacgcagggagctccgtctggggcaacggagacaccaagacatcc
gctgactcctcctccaagaactcaggctgggactcggcaccctccggaggcatgtccggc
tggggccactctggcagcggaggaggcgcgagtggcggtggagaaggaggctggggagga
gactgggggaagccctccagcggtgaggccaaaggaggctgggattcctcagatggccca
gcccaggaccagcaggtgagctcctggggccagccaatcccggccccgactagtgagggt
agcggaagtggcggcagtgaggggcgctcccaccgcagggacaggaccggcagcgaggac
ggaggcccccctccccttcctcggcaggaccttgacccccgggtgctgtgcaacacaggc
tggggccagacgcccgtccgccagcacacctcctgggagatggaggagcagcgcgccgcc
aatgagaggaagaccagcgagatgaggggaggcggtggaggggacacttggaggggctcc
agcccctcttccggatccccaccggacccccggaacgggggagccaaccctaacttggga
ccatctcagaggccaggctcagggggctccggaggcaagagcgagggaccctcaggctgg
ggaggccctccaccctcaggctggggggagcagcctgtcaacaaggcccccaacggttcc
gtcagtggctggggggagcccatggcccaaggccacaacaccacaaacaatggccccaag
agtggagttcaatcctggggtgtccctgaggggaagtcctcccctacctgggacgacggg
ccagcgaagacccagcagaaccagtcccagagctggggagagggtcccaagtcttcccac
ggctggggctccggccacggaagtggcagccgtggctccaatggctccaacggctccaat
ggaggagagtggagagaaccggccgaggtgaagaagaatggatcctccagccacatgtgg
gaaggagaaggagggaatggacgagaaggaggagggtggaaggacagcaccagaggaggt
ggaggaaatgggggcggctgggcgtcgaagcctgcctctgctgttggaggtggtggctgg
ggggagacccaacatcccaacagcccagcaccaggatggggctccaagccccaggaaagc
cccaacggcccagcaccaggatggggctccaagccccaggaaagccccaacggcccagca
ccaggatggggctccaagccccaggaaagccccaacggcccagcaccaggatggggctcc
aagccccaggaaagccccaacggcccagcaccaggatggggctccaagccccaggaaagc
cccaacggcccagcaccaggatggggctccaagccccaggaaagccccaacggaaatagt
ggaggtgttggaacaggaggaggcagcatggggtcctggggcggccctgcatctgtaagg
cagagttccaaccccggctggggcccggggagctctgtagccaaacccgacccagcgatg
gagcccaccggctgggaggaaccctctcctccctccatccgccgcaagatggagatcgat
gacggcacgtccacctggggagaccctagcgcctacaacaagactgtgaatatgtgggac
cgcaacaaccccactggaggtaacggtaaccaaggcaacaaccccacccagccgccgacc
agcaagagcaacggaggcatggccgtcaacagccacaaccactcctccgtcccccctagc
aacaacaatcaccaccacatgaaccaccaccacccgcaccacggacagcccccgccacac
agccagcaccacggcaacaacaatggatcccccaacaccgccgccccgcaccagggcggt
ggaccccagggcagaccacctatggccaacccaggctggggggagctgcccagtgtccag
cagcccaagccagagccagcatggggggagcccgctggcccctctcctgcagtggacaac
ggcacctctgcctggggcaaaccccctggtgttcctggaggctggggcgatggggggcac
ggagggcacgaacccaatggaccctacaggaggggcaacaacggcccctctggaccggcc
ccctgcaagccagcccccaaatctatgcaagacggctggggaggcgggagggaggaggag
atgggcatgtcttctggccaatgggatgctgacgccggagacatgtggaacagccccgcc
tcccaggagagcagctcctcctgtaactcgtggggccagccgcccaagaagggcccgccc
aagggcaagatgggcaaccagccagacgaagcctggatcatgaaccgtctcatcaagcag
ctcactgacatgggcttcccgagggatcctgccgaggaggctctgaagagcaacaacatg
aacctggaccaggccatgagcgctttgttggagaagaagactgaactggacaagcggggc
atgggcatgtcagactacaacaacgggatgaacaagccgttgggttgccgtccccaggcc
ctctccaaagacccctcctcggaccgcagcccattcctagacaaggacggtggtttgtca
gatgacgcccccccctcaccgtttctgccttctcccgtcagcctgaagctccccctggtt
aacaacctgcagcctgggctggccctgggctccccggggctcaacatgcagaacttgaac
aacagacagatgcagagtggaatgttgggcagtagtggagcagcactatcccgggccatg
cagcagcagcctcctcagccgtcagtgccgcctctcggctcctcccagcctagtctccgc
gctcaagtgcctcagtttctcacccctcaggttcaagcacagctcttgcagtttgccgca
aaaaacattggtctgaaccctgcacttttaacctcaccaataaaccctcaacaaatgacc
ctgttgtaccaacttcagcaactgcaaatggcgtaccagcgtttacaaatccagcagcag
atgatgcaagctcagcgcaacgtctccggccccatcagacaacaagagcagcaagttgca
cgtacaatcaataacatgcagcagcagatccaacagcaccagcgtcagctgtaccaggcc
ctgctgatgaagcagcagccccccggctcccactccggcctgcacccgggccaaggcaaa
tcagccctggactcgttcccaggccacccccaggctccgggcctctccgacctgcacacc
aaagagccgcagtcttctcccaactcctacagcccctaccccctctctggactcaatcca
aacatgaatgtaaactgcatggaggtggggggcctgtccatgaaggagcccccccagccc
cagtcccgtctgtcccagtggacccaccccaactccatggacagcctctctggaaactcc
tcccacatggaggccaacctcaataagcatggtgccatttctgctgcttctaacctgggc
ccccctggaaagcctccccacatggatgactcctacagcccatacagtatgatgggtggg
tctgagtctcccacctcccccctggttccccctgacagctggggccagggaccaggaaag
agccccaaggaccagatcaccaatggaacgaatatcaactggcccccagagttctgtcca
ggcgtgccctggaagggcctgcaaaacattgaccctgagaacgaccccaacatgacccca
ggaagtgtacccagcggccccaccatcaacaccaacatccaggacgtcaaccgctacctg
ctccgggaccgcagcggaggctcctcccctccttcaccgcctcagaacggtgctctgccc
ccctccacggactggccagtcagtggctgctacactagctctttcagtctgtcctccccg
gatgaggagtgtgcaggtaaactatctgacatgaagtccacctggtccccggggcccatc
tcccacccctcccaggcctctctatcccacgagctgtggaaggtcccccaggggccccgt
aacaacacagccccttcaagaccccctccgggcctcaccaaccctgccaagccctcctcc
acctggggaggaaactccctgggcctggcccaaggctggagcagctcgtacacctcagag
ggcaccacctggagcacagacagctccaacaggaccagtagctggctggtactgaggaac
ctcaccccccagatagacggctccaccctgcggacgctgtgcatgcagcacggccccctc
atcacattccacctcttcctgacccagggaaacgctgtggtgcgatatagctccaaggag
gaggctgccaaggcccagaagtccctgcacatgtgtgtgctggggaacaccaccatcctg
gcggagtttgccggggaggaggaggtgaaccgctactttgcacaaggccagcagcagctc
ccgcccaccaccagctggcagcccaaccccggcaccaatcagacacgcatgggaggaggc
ggaggttcgcagcagcacgctattggccatcactggagcagcggtggtgggggcctgggg
ggaggagccaagacgggcggaggcggagacctcctgtgggggggcgtgccccagtactcc
agcctgtgggggccccctagtggcgatgacagtcgtggcgtcatcgggagccctaacccc
atcaacacgctgttgccaggcgacttgctgagtggagagtccatgtag
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integrated database retrieval system
