KEGG   Salmo salar (Atlantic salmon): 106587481
Entry
106587481         CDS       T04363                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    106587481
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sasa03021]
    106587481
   03036 Chromosome and associated proteins [BR:sasa03036]
    106587481
Transcription machinery [BR:sasa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     106587481
   Coactivators
    SAGA/TFTC/STAGA complex
     106587481
Chromosome and associated proteins [BR:sasa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     106587481
    STAGA complex
     106587481
    TFTC complex
     106587481
    SAGA complex
     106587481
    SLIK complex
     106587481
SSDB
Motif
Pfam: Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I TFIID_NTD2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_SCAP WD40_MABP1-WDR62_1st NBCH_WD40 WDR90_beta-prop_4th Beta-prop_Aladin DSE1_N ANAPC4_WD40 PAC11 Beta-prop_RIG_2nd CFAP251_N Beta-prop_WDR41 Beta-prop_NOL10_N Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_IFT140_1st RMC1_N Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st ASA1 Tricorn_2nd PEP5_VPS11_N WD40_like Beta-prop_WDR75_2nd BCAS3_WD40 PROPPIN PD40 WD_LRWD1 Beta-prop_ELP1_1st Nbas_N
Other DBs
NCBI-GeneID: 106587481
NCBI-ProteinID: XP_014031377
UniProt: A0A1S3PUM2
LinkDB
Position
ssa02:46920784..46924256
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGAKLSQSAEEMAANLTVQTELGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAALPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHGLFLGDAEQRSTVEQLRHVLTQQDVNANPKLLAFLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHIQVEVTSSPRTDYQLYGTTGAGAAGAATTAPNSTSSWSGADGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNAAEVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRADVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASG
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHGTTHADSSSSELVGLYTGNTSKVLNIQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggatactgaaagttccctgaagggggctaaactgtctcagtccgcagaggag
atggctgccaacctcacagtgcagacagagttggggtgtgcaaacattgtctctgctgct
ccttgccaagctgaccctcaacagtacgagacccaattttccagactacgcaattttctc
tcagaagcggcgttgccatggggccaggaggtgagctgcgtcctgtacccgctcttcgtt
tatctccacctggacatggtgcgctgcagcctgaagggggctgtggacggcttctacagc
cgcttccacggcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaacgccaaccctaagctcctggccttcctcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctatctgcagagc
gaagacaacagtaccctctgtagggccctcagcacccacatccaggtagaggtcacctcc
tcgccacgcaccgactaccagctgtacgggacgacgggtgcgggagctgccggggccgcc
accacggcccccaactctacctcctcgtggtcgggagcggatggccctgagcgaggagag
gcggcgggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaaaaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctac
gccttccagcacacggagcagctgctgaacgcggcagaggtgtcggccgacagcaagctg
ctggccgccgggttcgacagttcggccgtcaagctatggagccttagggccaggaaactg
aaggccaggccacaccgggccgatgtgtcacacatacgcttagcatgcgacgtgctggaa
gaggaggcagatgaagaggacggctcaggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacagccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctaggcagcttcaccaacacggccctctaccagggc
cacgcctatcccgtctgggacgtggatgtcagcccctgcagcctctactttgccagcggc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccccctgaggctctac
gccggccacctagcggatgtggactgcgtcaagttccaccccaactcaaactacctagcc
acaggctccacggataaaactgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccatcgtggccctgtgttgtccgtagccttcgcgcccaatgggaagtac
ctggcgtcggcgggcgaggaccagcgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcactagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggataactcagtcagggtgtgggacatccgaaactcc
catgggacgacccatgcggatagctcgtccagcgagctggtggggctctacacgggcaat
accagcaaagtgctcaacatccagttcatggcctgtaacttgctcctggtgacgggaacg
gcgcaggaaaaacatggacagtag

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