Salmo salar (Atlantic salmon): 106587565
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Entry
106587565 CDS
T04363
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106587565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106587565
03036 Chromosome and associated proteins [BR:
sasa03036
]
106587565
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106587565
Coactivators
SAGA/TFTC/STAGA complex
106587565
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
106587565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
106587565
NCBI-ProteinID:
XP_014031550
LinkDB
All DBs
Position
ssa26:complement(28959245..29047789)
Genome browser
AA seq
1038 aa
AA seq
DB search
MASTSDPLEDMLFSEVDEKAVSDLVGSLESQLVGQSNPADTQSENRGAGSTVTANHHLGK
TLPAQVGTTLVQQQQQGQHKAVMHQEMNSKEISSEKTVTSSSLSSIPSFEEASTTSGTGV
NATKCGLQSHGTSSITTLPASGGVATSPFVNSIIISSSSTTTSRGSALASGQTSTDIVDH
PRKRITASLRSASAGIQSLNGTGGAVTSRNNPPAAGTDALISSASAANSNRTVDVTSCVN
TTNFTLSNSSISSTQSAIPLDKGTPTIALQRLPSHIVASIAHNGNGTTVSALVKQGAIGP
ITCAAASQVNHKKEGSEAKSDAPVQSKIVMCSPLGVVNSLINAVSSPSAVFNLAATSTAS
HVMAKPAVNVVGQTTTVGMVRPASPAVATATQPLLRPGVPAAQRIVAPQLIVRPPQQQQT
TIQLPPGFTIPPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQNNISPRTATPTAGATF
RATTPQSPVTSQAIRPCPPPVQAKMVPSSSPTPSPVLQISSSTAPPSKGPMAPAVALMAP
QQAPVVLAPQAPDVMAPQVQVGAQAASQPALPPQTSAPAAPGASVISQEMQENVKKCKNF
LATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTNRLQSELKSSPQPYLVPFLKK
SLPALRLSLLNIQHSLIQPLPQATPTTGTSPAVRGRLPNSVSTTGASVGAQGHTAALGIK
QAGTAGCQVRMPMVITPLRTQGTVSKGATFQAGKSPVGFAVKGSGNQNNKLNDPGGGSFR
DDDDINDVASMAGVNLNEESARILATNSELVGTHIRSCKDEAFLHPGLLHRRILETAKKF
GMSEVPMEAVNFISHATQSRLRTVLEKVSSIAQHRMDGGKDEEWYEQSADVRSQLKFFEQ
LERIEKQRKDEQEREILLKAAKSRSRQEDPEQARLKQKAKEMQQQEMALVRQRDANLTAL
AAIGPRKKRKMDAPGATPSGTEVSGSSVGSPGASSSPSTSSQRQRQRITRVNLRDFIFYM
EQEKETAHSLLLYRALLK
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacctccgacccactggaagatatgctattttctgaggtggatgaaaaagct
gtgagcgatttagtgggctctttggagtcacaacttgttggacaaagcaaccctgcagat
actcagtcggaaaacagaggtgctgggtctacagtcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtactacactagtacagcagcagcaacaaggacaacataaa
gctgtgatgcaccaggagatgaactctaaagaaattagctcagagaaaactgttacatct
tcttcgctgagttctattccgtcctttgaggaagcttccaccacttcagggactggagta
aacgctaccaagtgcggtttgcaatcacatggaacatcatctatcacaacactacctgca
tctggtggtgtagcaacttctccgtttgtcaacagcatcatcatcagcagcagcagcacc
accaccagccgaggttccgctctggcttcaggtcagacatcaacagacattgtcgatcat
ccaagaaaacgcataactgcatcgttacggagtgcatccgcgggaatacagagtttgaac
ggtaccggaggagcggtaacgtcaaggaataatccccctgcggcgggaactgatgcgttg
attagcagtgcaagtgcagcaaactcaaatcggaccgttgacgttacatcttgtgtaaat
acgacgaatttcactttatcaaactccagcatttcttcaactcaatcagcgattcccctg
gataaggggactcctactattgctttgcaaagactaccaagtcacattgtagcgagcatc
gcacataatggaaatggcactaccgtctcggccttggttaaacaaggcgcgataggaccg
atcacctgtgcagcagcttcgcaagtgaaccacaaaaaagagggttctgaagcgaagtcg
gacgctcccgtacagtctaaaatagtcatgtgcagtccgttaggtgttgtcaattcctta
ataaacgctgtttcctctccctctgctgttttcaacctagcagcgacttctactgcaagt
catgtcatggcaaagcctgctgtcaatgttgttggacaaacaacaacggttggaatggta
aggccagcatcaccggctgtggccacagctacacagcctctgcttcgaccaggagtccca
gcggctcaaaggattgtagccccccagctgattgtcagacccccccaacaacaacagacg
accattcaactgcctcctgggtttaccatcccaccgggaatggtgttggtgcgcactgag
atgggtcagctggtgatggtcccacagcaggcccttgcccaggcacaggcccaagcccag
gcccaggcccagaataacatctccccccgaactgccacccccactgcaggggccaccttc
agagcaactaccccacagtctcctgtgacctctcaggctattcggccatgtcctcctcct
gtccaggccaagatggtgccgtcttcctctcccactcctagtcctgtcctccagatctcc
tcctccactgcgccaccttctaagggccccatggcgccggctgtggcattgatggctccc
caacaggcccccgtggtgttggccccccaggcccccgacgtgatggccccccaggtccag
gttggggcccaggctgcctcgcagccagccctgcccccacagaccagcgcccctgcagcc
ccaggagcctctgtcatctcccaggagatgcaagagaatgtgaagaagtgtaagaacttc
ttggccaccctgataaagctggcttcccacaactctccgtcacctgagacctccaaaaat
gtcaagtcactggtccaggatctactggatgctaagattgagcccgaggagttcaccaac
agactgcagtcagagctcaagtcgtctcctcagccctacctggtccccttcctcaagaaa
agcctcccagccctgcggctgtctctgctcaacattcagcattccctgatccagcctctg
ccgcaggccacccccaccacaggcaccagccctgctgtccgcggccgcctccccaacagc
gtcagcaccacgggggccagtgtcggggcccagggacacacagctgccctgggtatcaag
caagcgggcaccgctggttgccaggtcaggatgcccatggtgatcacaccattaagaacg
caaggcactgtcagcaagggagccacgttccaagcaggcaaaagtcctgtgggttttgcc
gttaagggctctggaaatcagaacaacaagctgaacgatcccggaggcggttctttcagg
gatgatgatgacattaacgatgtggcgtccatggcgggggtgaacctgaatgaagagagc
gcccgtatcctggccaccaactctgagctggtgggaacacacatccgctcctgtaaagat
gaggctttccttcacccgggcctgttacacagacgcatcctggagacagctaagaagttt
ggcatgtcagaggttcctatggaagcggtgaacttcatctcccacgctacccagtcccga
ctccgcactgtgctggagaaggtctcctccattgcacagcacaggatggacggcggtaag
gatgaggagtggtatgagcagtcggcagatgtgcggtcgcagctaaagttctttgagcag
ctggagaggatagagaagcagaggaaggatgaacaggagagagagatcctactcaaagca
gctaaaagtcgctccaggcaagaggacccagagcaggctcggctgaaacaaaaagctaag
gagatgcagcaacaggagatggccctggtgaggcaacgagacgcaaacctgaccgcgcta
gctgccatcggacctcggaagaaacgaaagatggacgcgccaggggccacgccgtcaggg
accgaggtatcaggcagctcagtggggtcgccgggcgcctcctcctccccctccacgtcg
tcacagcggcaacgtcaacgcatcacccgcgtcaacctcagggacttcatcttctacatg
gagcaagagaaagagacagcccactcacttctgctctatcgggctctgctcaaatag
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