Salmo salar (Atlantic salmon): 106588242
Help
Entry
106588242 CDS
T04363
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106588242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106588242
03036 Chromosome and associated proteins [BR:
sasa03036
]
106588242
Enzymes [BR:
sasa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106588242
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
106588242
mRNA degradation factors
5'-3' decay
Decapping complex
106588242
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Gene silencing
piRNA pathway
106588242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
106588242
NCBI-ProteinID:
XP_014032535
UniProt:
A0A1S3PXV4
LinkDB
All DBs
Position
ssa27:5243629..5312481
Genome browser
AA seq
492 aa
AA seq
DB search
MAAARTENLGPVVMGLNKQNGQLRGPPKLASPQSGPLVLGSLSDEATGASQKAGAAQEGT
GIRFGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLAKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKNLYVAEFHTANLDCEVEE
ELKETGCQQEEP
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgccagaacagagaaccttggtcctgtcgtcatgggactgaacaagcagaac
gggcagcttagggggccgcctaaactggcttctccccaatcaggacccctcgtcctgggc
tctctgtcagacgaggccacaggtgcatcccagaaagcgggtgctgcccaggagggaact
gggattaggtttggagatgactggaaaaagagcctacagctccctcccaaagacaccagg
gtcagaacctctgatgtaacgtccactaaggggaatgagtttgaggactactgtctgaaa
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctatccaggag
gagagcattcccatagccctgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggactat
atacaggccattgtgatggtgcccactcgtgagctggccctgcaggttagccagatcagt
atccagatcagtaagcacctgggcggcgtgaaggtcatggccaccacgggcggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcatagccacacccggc
aggatcctagacttgataaagaagggcgtggccaaagtggatagagtccaaatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtagtgcttatcgaggatatcatc
agcttcctggccaagggccgtcagatcctactctactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaagtccactgt
ctcaacacgctcttctcgcggctgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctagccaagaagatcacccagttgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaaccgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcaccgatctgttcaccagaggtattgacatccaagccgtcaat
gttgtcatcaacttcgacttccccaagaacgccgagacatacctgcatcgcatcggaaga
tcagggaggtttggtcacctgggcctggccatcaacctgatcacctctgaggaccgcttc
aacctgaagtccatcgaggaccagctggtcaccgacatcaagcccatccctggcagtatc
gacaagaacctgtacgtggccgagttccacaccgccaacctagactgcgaggtggaggag
gagctgaaggagacaggctgccaacaggaggagccctag
DBGET
integrated database retrieval system
