Salmo salar (Atlantic salmon): 106588308
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Entry
106588308 CDS
T04363
Name
(RefSeq) myocyte-specific enhancer factor 2D homolog
KO
K09262
MADS-box transcription enhancer factor 2D
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
106588308
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106588308
04131 Membrane trafficking [BR:
sasa04131
]
106588308
Transcription factors [BR:
sasa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
MADS-box regulators of differentiation, MEF-2
106588308
Membrane trafficking [BR:
sasa04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Selective cargos
106588308
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRF-TF
HJURP_C
Motif
Other DBs
NCBI-GeneID:
106588308
NCBI-ProteinID:
XP_014032617
UniProt:
A0A1S3PY40
LinkDB
All DBs
Position
ssa27:12852258..12868136
Genome browser
AA seq
569 aa
AA seq
DB search
MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST
DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFSGCESPEPDGEDSIDQIPLNDDKYRKT
TEDLDILFKRYGVSSSVPPPTFSVPVTVQASNQNALQFSNPGNAMVTTTYVTSSSLSDNH
HLSPQPPALQRNTVSPGLPQRPASAGAMLGGDLNNSNGGCPSPVPNGYISARASPGLLSV
SNGNSLGKVVPAKSLPPPQSPQMVNSRKPDIRVITTQGGKSLMQMTDDELEMVSENAQRL
AGAQVTQMLTTPVVSVTTPSLLAQGMPFSAMPTAYNTEYQLTSADITALHALASPGGLLQ
GNAPWQQSLSQQQHQQQQQLSLASLSNLVMWGMDKQSGELSSQISSLAANLSASQSNLLL
GRDEWLGRPVSHIPQGAMLTVNTNSNVSIKSEPISPGRDRRSPCPPPSSSGGGNQTTVPP
PQYPGSLLCLEPPTGRSPAHSLSSNGSSYEGNDRDDPGAGGGIGGSAAGNRGRSLPPDFS
PSVELLRAQNEVEQEGANIKRMRLDAWVT
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaagaagattcagatccaacggatcaccgatgagaggaacagacaggtgacg
ttcaccaagaggaagtttggcctgatgaagaaggcgtacgagctgagcgtgctgtgcgac
tgtgagatcgccctcatcatcttcaaccactccaacaagctgttccagtacgccagcacc
gacatggacaaggtcctgctcaaatacaccgagtacaacgagccccacgagagccggacc
aatgctgacatcatcgagacgttgcgaaagaaaggcttcagcggttgcgaaagtcccgag
ccggacggcgaggactccatagaccagatccccctgaacgacgacaaataccgcaagacc
accgaagacctagacatcctcttcaagcgctacggtgtaagttcttcggtcccgcccccc
acattctctgtgcccgtcaccgtccaggcctctaatcagaacgcattgcagttcagtaac
cctgggaacgccatggtgaccaccacctacgtgacgtcgtcatcgctctctgacaaccac
cacctgtcaccccagccgccggcgctccagagaaacacagtatctcccgggttgccacag
cgaccggccagcgcaggtgctatgcttggaggtgacttgaacaactcaaatggtggatgc
ccaagtccagtccctaacggctacatcagtgccagggcctccccgggcctcctctctgtc
tccaacggcaacagcctggggaaagtagttccggccaagtccctacctccgcctcagagc
ccacagatggtcaacagccgcaagccagacatccgggtaatcaccactcagggtgggaag
agcctgatgcagatgacagatgatgagctggagatggtgagcgagaatgcccagcgtttg
gctggtgcacaagtgacccagatgctcaccacaccggtggtctccgtgacaacgcccagc
ctcctggcgcaggggatgcccttctccgccatgccgacagcttacaacacagaataccag
ctgacgagcgctgacatcaccgctctgcacgccctggcgtcaccaggtggcctgctgcaa
ggcaacgcgccatggcaacagtctttatcccagcagcaacatcaacaacagcaacaactt
agtctggcgtcgcttagcaacttggtcatgtggggcatggacaaacagagcggggaattg
tctagccagatctccagtctggcagccaatctgagcgcctcgcagtccaacctcctcttg
ggtagagatgagtggttgggccggccggtgagccacatacctcaaggcgccatgctgact
gtcaacaccaactccaatgtgagcatcaagtctgaacccatctcgcccggccgagaccgc
cgctcaccgtgccccccgccgtcctcctctggagggggcaaccagacgaccgtgcccccg
ccacagtaccctggttccctactgtgcctggagccaccaaccggccgttcccccgcccac
agcctcagcagcaacggcagctcctacgagggcaatgaccgggatgaccctggggcaggc
ggcggcattggcggaagtgcagcgggcaaccgtggtcgttccctgcctcctgacttcagc
ccttcggtggagctcctgcgggcccagaatgaggtggagcaggagggggccaacatcaaa
cgcatgagactcgacgcgtgggtcacatag
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