Salmo salar (Atlantic salmon): 106588450
Help
Entry
106588450 CDS
T04363
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106588450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106588450
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106588450
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
106588450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
106588450
NCBI-ProteinID:
XP_014032937
UniProt:
A0A1S3PZ16
LinkDB
All DBs
Position
ssa27:8562910..8579879
Genome browser
AA seq
928 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIRKIKDDVEYYMDSSQDPDFEENEFLYDDLDLEELPTSPSV
SPHPSLVSLAGSLVATSPPGQSLLDDDLFNQISSGTPTSTTSSSPIPATYTTENSEDDKK
RGRSTDSEISQSPVKNGNPSSSLSSSSSSSSSSSSSSASGASSGAASSSLASMVTMAGGG
QAIAGGNNNSLLGNMGGLLSNSGSYSDATQQQLQQHHHQTQQARNSVLSSNAPSSTSNNI
LLPSPSASSPAISSTALAPNTQPQAPSRPSPGSTLGLGLGLGLGKGGMSGSPAVSQMSGL
GLSGMPASLNTMAGLLAGSTSAPYATAAAGSGTIGSPLAGKISSLSTSSTNSSAVGLVSG
HGVSERSTGLLGSVPGAVGVSGGILGLGSGQSTVQGPPLVTPSPIGGGLGAIGSIGGNSG
SGAPSNSVGIGGGSAAIARLPSGQKQNGSTSYSAVVADSTPDSALNSASQLQSSQPSSLT
STTNQLKDSGPSLLGSMTLPTSTPSPSYIESKPSGSSMLNGPLCYTQASESMKPQEPLST
VKSMAEQAALGSAMEGELPLLHLTTDIFPSTTAPPSAPQQPSLSEVSIPPSLGVCPLGPV
PLSKDQLYQQAMQESAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQVPPPHSDSVEFYQR
LSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYI
YFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagtaacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactacagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcggttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggac
cagtttgagagcgaagtagagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
cgcaagatcaaggatgacgtggagtactacatggactcgtcgcaggaccccgacttcgag
gagaacgagttcctctacgacgacctggatctcgaggaactccctacctctccctctgtc
tccccccatccatctcttgtctctctagccgggtcactggtggccacgtccccgccgggc
caatcgctcctggacgacgatctcttcaatcagatctccagcggcacgcctacctccacc
acttcctcttcgcccatccccgccacgtacactacggagaactctgaagatgacaagaaa
aggggacgttcgacagacagtgaaatcagtcagtcgcctgtcaagaacggcaacccctct
tcgtcgttgtcttcctcgtcgtcgtcctcgtcctcctcctcttcatcatctgcctctggc
gcctcctcgggagccgcctcttcctcgctggcctctatggtgaccatggccggaggcggc
caggccatcgctgggggcaacaacaacagcctcctgggcaacatggggggtctcctctcc
aactctggcagctacagcgacgctacccagcagcaactgcagcagcatcaccaccaaacg
cagcaggccagaaactcagtcctctcctccaacgccccctccagcacgtcgaacaacatc
cttctccccagtccctccgcctcctcgcccgccatctctagcacagccctcgcacccaac
acccagccccaggctccgtcaaggccctctccgggctccaccttggggctcgggttgggc
ttgggccttggtaaaggcggcatgagtgggtcaccggccgtcagccagatgtcgggcctt
ggcctgtcagggatgccggcgtccttaaacaccatggccggtctcctggcgggctccact
tcggccccctacgccacggcagcagcaggctccgggaccataggaagcccccttgcagga
aaaatcagcagcctgagcactagcagcactaactccagcgcagtgggactggtgagcgga
cacggtgtcagcgagagatccacgggcctgttgggctctgtgcccggtgcagttggtgtc
agtggtgggatcttgggccttggctcaggacagtcgacagtccagggccctccactggtg
acccccagtcccataggaggaggcctgggagctataggaagcattggagggaactctgga
tcaggagcgccaagcaacagtgtgggcatcggaggaggaagcgcggcgatcgcaaggctg
cccagtggacagaagcagaatggtagcactagttacagtgctgtagtagcagacagcaca
ccagattccgccctcaacagtgccagccaattacaaagcagccaaccctcgtctttgacc
tccaccaccaatcagcttaaagacagtggccccagccttttagggtccatgacccttccc
accagcactccctcgccatcctacattgagagtaaaccttcaggcagcagtatgctcaac
gggccgctctgctacacacaggcctctgaaagcatgaagccccaggagcctctgagcact
gtgaagtccatggctgaacaagcggcactgggctcagcaatggagggagagttgcccctt
ctgcacctcaccacagacattttccccagcactacagcgcctccctcggccccccagcag
ccctcgctctcggaggtcagcatccccccatcgctgggtgtgtgcccgctggggcccgta
cccctgtccaaagaccagctgtaccagcaggccatgcaggagtcggcctggacgcacatg
ccccacccctccgactcagagaggatcaggcagtacctgatgaggaacccgtgtcccacc
ctgcctttccaccaccaggtgccacccccccactccgactctgtagagttctaccagaga
ctgtccacggagacactgttcttcatcttctactacctagagggcactaaggcccagtat
ctggcagccaaggccttgaagaagcagtcatggcggttccacaccaagtacatgatgtgg
ttccagaggcacgaagagcccaagaccatcacagatgagtttgagcaggggacgtacatt
tactttgactacgagaagtggggacaacggaagaaggagggattcacgtttgagtacagg
taccttgaagaccgagacctccagtga
DBGET
integrated database retrieval system
