Salmo salar (Atlantic salmon): 106588514 Help Entry 106588514         CDS       T04363                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa03018   RNA degradation Brite KEGG Orthology (KO) [BR:sasa00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     106588514  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sasa03019]     106588514 Enzymes [BR:sasa01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      106588514 Messenger RNA biogenesis [BR:sasa03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      106588514   mRNA degradation factors    3'-5' decay     Ski complex      106588514 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk HTH_23 DUF3516 Motif Other DBs NCBI-GeneID:  106588514 NCBI-ProteinID:  XP_014033099 UniProt:  A0A1S3Q0W5 LinkDB All DBs Position ssa27:complement(5729487..5773526) Genome browser AA seq 1250 aa AA seqDB search MEIIDLPPVGPTDLPLSLLEMGCSGRFELITHPQPNNQTLYPQSTLPHGLPPTSVGLETE VEKRFLRDPAWLPIHDTDAAFHRFLKLTERDVHVDSLLHCSSSPLHSGISVVRDPTTGML LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMDELTLEQLKTKSE LEEDIDFENGLLTVPPGLKVGMDFSDKDAKTTKGEINLLSLLSTFDDIVDSQPEAEEKEK GLGSGDALKLPRTNSLDDLGIKDSPSTPGTTSTEKKDGGTTKPGKGHEEKKRWAIPVDIT SPCDDFYKRIPNPAFKYPFELDMFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLNPEASCLIMTTEILRSMLYNG SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRI KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKELFLLLDPIGNFQTKGYYSAIDAKKERTS KHAQSFGTKNASQKTTPNQDRAVWLSLLHSLSQRQQTPVVAFTFSRTRCDDNARSLASMD LTSSGEKSEIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEML FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD ATGTVIILCKSGVHDMGDLHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRITAEALQCAVLGS VNGLKALSVGRVVVVNNKQHFNALGVILQVSSDSVNRTFTALVICEKGNEEGGGDNPNAS AFPHLYNTALFLPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQPRFRLDP PGQAISTATQELLRLAEANPGGVVTLDAVNDLQLKSVDVVEGTMRLRVLQDSLKDFNCIH SPTFSEQFLRVQERMSVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDNSGAVQL KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLQEGIE RVLAVAQRIGELQRDCGITQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH NT seq 3753 nt NT seq  +upstreamnt  +downstreamnt atggaaataatagatcttccccctgtaggccccacagatctcccgctatccctgctggag atgggttgctctggcaggtttgagctcatcacacatccacagcccaataaccagaccctg tatccacaaagcacgctcccccatggactccctcccaccagtgtgggcctggagacagag gtagagaagcgcttcctacgcgaccctgcctggcttcccatacacgataccgacgctgcc ttccacaggtttctgaagctgactgagcgagacgttcatgtggactctcttctccattgc tcttcgtctcctctacactctggcatctcagtagtcagagatccaacgacaggaatgctt ttggacttcactgaggtgttactgggagacacaggcatctctgctaagaattctatgtcc ctgcagcgcccaccaaaccctaatccctctgagagcctccgaggaagcaacaccaactac ccctttctgcctggtggtatggacgagctgacactggagcaactcaagacgaaatccgag ctggaggaagacatagactttgagaacgggttactcacagtgccacctggacttaaagtt gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaacctcctgtcc ctcctatccacctttgatgacatcgtagactcccagcccgaggcagaggagaaagagaaa ggactcggaagcggagatgctctcaaactacccagaaccaacagcctggatgacctgggg atcaaggactctccctctacacctgggaccacctcgacagagaagaaagatggaggaacg accaaaccaggaaagggccatgaggagaagaagagatgggctatcccagtagacatcacc tccccttgcgatgacttctacaaacgcatccccaaccctgccttcaagtatccctttgag ttggacatgttccagaaacaggcagtattgaggctggaggcccatgagtctgtgtttgtg gcagctcacacatcagcaggcaaaaccgtggtggcagaatacgccatagcactctcacaa aaacacatgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttc cgcgacttcaagaccacctttggggatgtggggctgctgactggggatgttcagctgaat cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt tcagaggtcatcagagatttagagtgggtgatctttgacgaggttcactacatcaatgat gctgagagaggagtggtgtgggaggaggttctgatcatgttacctgaccacgtcagcatt attctgctgagtgccactgtccccaacgctgtggagttcagtgagtggatcgggcgcatt aagaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac ctgtacacaggcaacagcaccaagacccagaaagagctgttcctactgctggaccctata ggcaacttccaaaccaaagggtactattctgcaatagatgccaaaaaggaacgcaccagt aaacacgcccagtcctttgggacgaaaaatgcatctcagaagactacacccaaccaggac cgggcggtgtggctttccctcctacactccctgtcccagcgccagcagacccccgtcgtg gcgttcaccttctccaggacgcgctgcgatgacaacgcccgctctctagcctccatggac ctcaccagctcgggggagaagagcgagatccactccttcttccagaagagcctgagccgc ctcaggggaggggaccgccagctgccccagatcctgttgatgagggacctgctgaagagg gggatcgccgtgcatcacagcggcatcctgccaatcctaaaggaggtcattgagatgctg ttctcacgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaat atgcccgcgaggacagttgtgtttgacagcatacggaaacacgatggtaccggcttcaga aacctgctgcctggtgagtacatccaaatggctggtagagctggtaggagaggtctggac gccacaggcactgtcatcatcctctgcaagtcaggggtacatgacatgggagacctacat gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg attctcaacctgctgcgtgtggaggccctccgtgtcacggacatgatgaggaggagcttc tctgagagccacagagacacacaggcccatgagcaacagataggtcaattgaaacagact ctgtcctctcttcctcctctggacacggaggggcagctgtctgacctgctgccgtactac tacactgtcactgagctacgcatcaccgctgaggcgctgcagtgtgcagttctggggtcc gtgaatgggttgaaggctctctccgtgggacgagtggtagtggtcaacaacaaacagcac ttcaacgcccttggagtcatcctacaggtgtctagcgactcagtgaatcgtacgtttact gctctcgtcatctgtgagaaaggcaacgaggagggaggaggggacaaccccaacgccagt gccttcccccacctctacaacactgccctctttctacctgagggtccctgcagtcacacg gtccagaagctgaagctacaggacgtgtcagccatcacagtcaagaccctgaaggtgatc cctgaccgaatcatcgacaactacaacaagaggcagcagccgcgcttcaggcttgatcct ccgggccaagccatctccacggcaacccaggagctcctgcgattggcggaggccaaccca ggcggggtggtgacccttgacgcggtgaatgacctccagctgaagagtgtggatgtggtg gagggcaccatgaggctgcgcgtgctgcaggacagcctcaaagacttcaactgcatccac tcacccaccttctcagaacagtttctgcgggtgcaggagaggatgagtgttcaggaggag ctggacaaactgctcttcctcatctcagatcagtccctgtctctactgccagagtaccac cagagaatcaaggtgctccagtccctgcagtacgtggacaatagcggtgctgtgcagctg aagggcagggtggcctgccagatcagtagccatgagctgctcctcacagagctactgttt gagaatgccctgagtcccctggcccctgaggagagcgccgccctgctgtcctgtctggtc tttcaacagaagacccaggtggagccccacatcaccaacacactgcaggagggtattgag agagtgctggcagtggcccagcgtattggggaactgcagagggactgtgggataacccag acagctgaagaatttgtgggccagttcaagtttggcctgaccgaagtggtatactgctgg gccagaggcatgccatttgcagagattgcgcagttaacagacgtccaggagggcacggtg gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccaggcagcacgcatc gtgggagactcggtcttgggcagcaagatggagaaggcctccctggccattcgcagagac atcgtgttcactgcttcgctctacacacactga

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