Salmo salar (Atlantic salmon): 106588633
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Entry
106588633 CDS
T04363
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sasa03009
]
106588633
Ribosome biogenesis [BR:
sasa03009
]
Eukaryotic type
90S particles
Other 90S particles
106588633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
Suf
TPR_19
TPR_14
HAT_Syf1_CNRKL1_C
OB_RRP5
ARM_TT21
NRDE-2
TPR_CcmH_CycH
TPR_16
ARM_TT21_5th
TPR_15
Motif
Other DBs
NCBI-GeneID:
106588633
NCBI-ProteinID:
XP_014033285
UniProt:
A0A1S3PZZ9
LinkDB
All DBs
Position
ssa02:51466817..51488972
Genome browser
AA seq
1809 aa
AA seq
DB search
MASTEEDFPRGGKTKQTTESKAEPVRRHTEVDNLFETHEPEESKKRKGQKEDALKKAKRQ
KTSKEEALKLNTTTSVDILQLKSLKVGTLLLGCVKEVADFEVTINLPSGLLGYLNISNIS
DSYTKILSDHLDSASSEEIFSLSSLFSPGMLVRCVVARLDTAKGGSVSIQLSINPKEVNK
GFSTGSLKAGLILSGCVESIEDHGHLVDLGIKGTKAFLPKQAAKDKTNSPKELKVGQYVT
FLLEEVKNDGRVVRLSISPTAVAQAVADTEHGWTLTNLLPGLLVKAQIKKVTLHGLILEF
LSSFTGLVDFMHLEPEQASTFSEGDNVKACVLYVEPSTRLVGLSLRSHLLQPGGDVDLVA
TERIGEVAHGCKMTALHHLSGAMLKLPDQTVVFVHRNHMKEPREAFNLNRVMAKPEHTCR
IMDFSPMEQVHLVSLRQSVINAPFFRRYHDIHPGQIVQGTVTSLQSHGMMVKVTDYIRGL
VPRTHLSDIILKNPEKKYTVGMTIKCRVLSVDPQEKKLTLTRKMALVDSSLPLFLTYEDA
RRGRVSHGFIVCVKDFGCIVCFYGEVKGLVPPNELSTEPVIVPENMFYVGQVVKAKVLNC
DVEKEKLLLSFKAVAGGDTEAPPKPTFDFEVGKKVEVKVVSKVLTGLEVSILPEETTALL
PMMHLSDHVSNCLLLWEGLQEGDIISNIVCLSKKKPNITLTKKPTVKSFLEEGGVVAKEF
SDITVGVQLIGWVKNIMPYGVFVEFPYGLVGLAPKAAISDKFVSDTGAHFQLGHTVVAKV
TNLDEEKHRFLVSLKVSEVTSPKRDGQARLIQGLQERKAVMEMMASRGDSDLFTQLSAVT
IGQKMKMSVDEVREDGSVTFKSDELSAATVLATKDNVPGKLATGQKCMPVILHVDLMTSQ
VYVSLLTKLTGKRQEVEAGSTHTATVHHADRDFAVISLGDTAQLTVIQTTNHPNETFRFD
SEKLTAGKTLTITVTKSSCEALEGLPLVSWELAPPERKRFISDSKRSKGTYRYGDVVKGK
VKKVKPTCVLVTLEDGSTGCVHVSEIQEVVCVGTFPTSLLKIGSEVTARVIGGREGNSHR
FLPFSHPNFTYSMPELTLLPSKLKEDADIKPVKTKEMLKRYQVGDDVICFVSKYFPTRKC
LEVTTGPSVTGTVEQLAMTSDPKDAKHPEKLFKLGQAVSAKVVTVSSSKPSRLSLSLNGV
HKLEKGHVIMGLVQKLDPNLGLLVKLPFSAMGTVAMEDLADKYKPKPLERYSKDQLVRCC
IVGEAKSKWQLSLRPSRTNPGKASVVKDPEIVSLEDLSEGQIVRGYVRTVNAQGVFVSLS
RSIKGRAQFQKATKYFVASHQDYAKKVPQSTLLTTKILSIDKEKGLVDLSLLQEDTGKPD
VIPESLGLHLRVTGEAKEKRDATKKRKRTESESKQGTAEKVLKKKKTGKGEDSDSGVEVY
FREEEVEEEKKLEPAEVEKPVPVQPARLQVTGGFSWDAALSALKPASAALGGEDSSDGED
DEVNTKPQKKSRHEQEVEKREAEKALTKLETELMDPGLRPQTAASFERLLLSSPDSSLLW
LQFMAFHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENLYGTEESLQKVFE
RAVQYCEPMPVYQQLADIYAKCQKTKEAEGLYKTMVKRFRQEKAVWLSYGTFLLQQGQSD
AASALLQRAIKSLPNKDNVDLIAKFAQLEFRYGDVERGKTMLDKILTSYPKRTDLWSVFI
DLMVKHGSQKEVRAVFDRVIHLSVAVKRIKFFFKRYLEYEKKNGTPESIQAVKEKALEYV
ESKGTEAAR
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacggaggaggacttccctcgtggaggtaaaaccaagcagaccactgaaagt
aaagcagaacctgtgagaaggcatacagaagtggacaatctgtttgagacacatgaacca
gaggaatccaagaaaaggaagggacagaaagaggatgccttgaagaaagcaaagaggcaa
aagacgagcaaagaggaggctctgaagctcaatacaacaacctctgtagatatcctacag
ttaaaaagcttgaaggtgggtaccctactgctgggctgtgtgaaggaggtggcagatttt
gaggtgacgattaacctgcccagcggccttttgggatacctgaacatttccaatatctcg
gactcgtacaccaagatactgagtgaccacctggactctgcttcttcagaggagatcttc
tctctctccagtctcttctccccgggcatgctggtcaggtgtgtggtagccaggttggac
actgccaaaggaggatcggtcagcattcagctatcaatcaaccccaaagaggtcaacaag
ggcttcagtactggctctctgaaggctggtttgatcctgagtggttgtgtagagagtatt
gaggatcacggccacctggttgacctcggcatcaagggaaccaaggccttcctgcccaag
caggcagccaaagacaaaaccaatagtcccaaagagctgaaggtgggccagtatgtgact
tttctgttggaggaggtgaagaacgatgggcgtgtggtccgtctgtccatcagccccacg
gcggtggctcaggccgttgcagacacagagcacggctggacccttaccaacctgctgcct
ggcctactggtcaaagcccagatcaaaaaggtgaccctacacggtctgattctggagttc
ctctcctccttcaccggcctggtggactttatgcacctggaaccagaacaggcctccaca
ttcagcgagggagacaacgtgaaggcctgcgtcctttatgtggagccgtccacccggctg
gtgggcctgtccctgcgcagccacctgctgcagccagggggcgatgtggacctggtggcc
actgagaggataggggaggtggcgcatggctgcaagatgaccgctctccatcacctgtct
ggagccatgctgaagctgcctgaccagactgtggtgtttgtacataggaaccacatgaag
gagcccagggaggcgttcaacctgaatcgtgtcatggccaagcctgaacacacctgtagg
atcatggacttcagccccatggagcaggtgcacctggtcagcctgcgtcagagcgtcatt
aatgccccgttcttcagaagataccatgacatccaccctggacagattgttcagggcacg
gtgacatccctccagagccatggcatgatggtgaaggtgacagactacatcagaggcctg
gttccacggacacacctctctgacatcatcctcaagaaccccgagaagaagtacacagtg
ggcatgaccatcaagtgccgggtgttgtcggtggacccacaggagaagaagctgacccta
actaggaagatggccctggtagattcctccctccccctgttcctgacctacgaagatgcc
cgccgcggtcgcgtctcccacgggttcatcgtctgtgtcaaggactttggctgcatcgtc
tgtttctacggcgaagtcaaggggctggtgccccccaacgagctcagcacggagccggtg
atagttcctgagaacatgttctacgtcggacaggtggtgaaggctaaagtgctgaactgt
gacgtggagaaggagaagctccttctttccttcaaggcagtggcaggaggagacactgag
gcaccgcctaaacccacgtttgactttgaggttgggaagaaagtggaggttaaggtggtg
agtaaagtccttaccggtctggaggtgtccattctgccagaggagaccaccgccttgcta
cccatgatgcacctctccgaccacgtgtccaactgcctactgctgtgggaggggctgcaa
gagggtgacatcatctccaacattgtctgcctcagcaagaagaaaccgaatattaccctg
actaaaaagcccactgtgaagtcattcctggaggaggggggcgtggtggctaaggagttc
tctgacatcacagttggggtgcaactgattggctgggtcaagaacatcatgccctacgga
gtgtttgtggagttcccctatggcctggttggcctggcccctaaagcggccataagtgac
aagttcgtcagcgacacgggggctcacttccagctgggccatacggtggttgccaaggtg
accaacttggacgaggagaagcacaggttcttggtcagtctcaaggtgtcagaggtcacc
tcccctaagagagacggccaggccaggctgatccaaggcctgcaggagaggaaggccgtg
atggagatgatggccagcagaggtgactctgacctattcacgcagctgtctgcggtgacc
ataggccagaagatgaagatgagcgtagacgaggtgagggaggatgggagtgtcaccttc
aagtcagacgaactcagcgcagccaccgtactggccaccaaggacaatgtgccgggtaag
ttggcgacgggacagaagtgcatgccggtaatcctccacgttgacctcatgacctctcaa
gtctacgtgtccctcttgactaaactgaccggcaagaggcaagaggtggaggcagggtcc
acacacactgccactgtgcatcacgccgaccgcgactttgccgtcatctcattgggcgac
acggcccaactgacggtcatccaaaccaccaatcaccccaacgaaacgttccgcttcgac
tctgagaaactgaccgccggtaaaaccctgacgatcaccgtcaccaaatccagctgcgag
gcactagaaggtctccccctagtgtcctgggaactcgccccgcccgaacgcaagagattc
atctccgactccaagaggtcgaagggcacgtatcgctacggcgacgtggtcaaggggaag
gtgaagaaagtgaagcctacgtgtgtgctggtgacgctagaggacgggagcacggggtgc
gtgcacgtgtccgagatacaggaagtggtgtgcgtgggaacgttccccacgtccctcctc
aagataggaagtgaggtcacagcccgggtcatcggaggacgggagggcaacagtcacagg
ttcttgccgttctcccatcccaacttcacttactccatgcctgaactcacacttcttccc
agtaaactgaaagaagacgcagatattaagcctgtcaagaccaaagagatgctgaagcgt
tatcaggtcggagacgacgtcatttgctttgtgtcaaagtactttccaacgaggaagtgt
ctagaagtgactactggtccctcagtaactggaactgttgaacaactggccatgacctct
gaccctaaagatgccaaacacccagagaagctgttcaagctgggccaggcggtcagtgct
aaggtggtgacagtcagctcctccaagccctcacgcctctcattgtctctcaatggtgta
cacaagttggagaagggccatgtaatcatggggttggtgcagaagctagatccaaacctg
ggtctgctggtgaagctgccattcagcgccatgggaacagttgccatggaggacctggct
gacaaatataagccaaaacctctggagcggtacagcaaggaccagctggtcaggtgctgc
attgtaggagaggcgaagagcaaatggcagctgtccctccgcccttcgaggacgaaccca
gggaaggcctcagtagtaaaggacccagagattgtgtctctggaagacctgtctgagggg
cagatcgtcagaggctatgtgaggactgtcaatgcacagggagtctttgttagtttgtct
agatccataaagggcagagcccagttccagaaggccactaagtactttgtggctagccac
caagactatgccaagaaagtaccacagtccacactgctcaccaccaagatcctcagcatc
gacaaagaaaaagggctggtggatctgtctctgctccaagaggacactgggaaaccagac
gttatcccagaatccctggggctgcacctgcgcgtgacaggagaggccaaggagaagcgt
gacgccaccaagaagaggaaacgcacagagtcggagagcaagcagggaactgcagaaaaa
gttctgaagaagaagaagacggggaaaggggaggacagcgacagcggagtggaggtgtac
ttcagagaagaagaagtagaggaggaaaagaagttggaacctgcggaggtggagaagccc
gtcccagtgcagccggccagactacaggtgaccggagggttctcctgggatgcagcgctg
agcgccctgaaaccagcatccgctgccctggggggagaggactccagcgacggggaggac
gacgaggtgaacactaagccccagaagaagtctcgccatgagcaggaggtggagaagcgg
gaggctgagaaggccctgaccaagctggagacggagctgatggacccaggcctgcgaccc
cagacggcggctagctttgagcgcctgctactcagctcccctgacagctctctgctctgg
ctgcagttcatggccttccacctgcaggccacacagatagaacaggccagagcggtggcc
gagagggctctgaagactatctccttcagagaagagcaggagaagctgaatgtgtgggtg
gctctgttgaaccttgagaacctgtatgggacagaggagagtcttcagaaggtgtttgag
cgagccgtgcagtattgcgaacccatgcccgtctaccagcagctggctgacatctacgcc
aagtgtcagaagactaaggaggcggaaggtctgtacaagaccatggtgaagaggttccgt
caggagaaggctgtgtggctgagctacgggaccttcctgcttcagcagggtcagagtgac
gcggccagcgccctgctacagagggccatcaagagcctgcctaacaaagacaatgtggat
ctgatagcgaagtttgcccagctggagttccgctacggagacgtagagcgaggaaagacc
atgttggacaagatcctgaccagctaccccaaacgcaccgacctgtggtccgtcttcata
gacctcatggtcaaacacggctcccagaaggaagtgcgggctgtgtttgaccgtgtgatc
cacctgagtgtggcggtgaagaggatcaagttcttcttcaagcgttacctggagtatgag
aagaagaacggcacgccagagagcatccaggctgtcaaggagaaggctctggagtacgtg
gagtctaaagggaccgaggccgccagatag
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