Salmo salar (Atlantic salmon): 106588642
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Entry
106588642 CDS
T04363
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
106588642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sasa03021
]
106588642
03036 Chromosome and associated proteins [BR:
sasa03036
]
106588642
Transcription machinery [BR:
sasa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
106588642
Coactivators
SAGA/TFTC/STAGA complex
106588642
Chromosome and associated proteins [BR:
sasa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
106588642
STAGA complex
106588642
TFTC complex
106588642
SAGA complex
106588642
SLIK complex
106588642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
WDR55
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_VPS8
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Tricorn_2nd
Beta-prop_Nup120_160
WD_LRWD1
LisH_PAC1
LisH_TPL
PROPPIN
RAB3GAP2_N
VPS8_N
Beta-prop_ACSF4
VID27
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
106588642
NCBI-ProteinID:
XP_014033297
UniProt:
A0A1S3Q037
LinkDB
All DBs
Position
ssa02:51458630..51465283
Genome browser
AA seq
747 aa
AA seq
DB search
MAAVQDGQLNLEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADDSPVSESAGAGSGGVPNVSADGGDANSLLSRVSM
ATPVAPPATAAPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLDCH
RAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEHMK
GNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKSQI
DAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSMGS
KSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPENLPSICFYSFLNAYQG
LTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDEKT
ASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQ
FSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNSNYVATGSADRTIR
LWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGHAD
TIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLLGT
YMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatctggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaatatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgctgcaatttctcaagaggaataaattgaccgagtcggtcgacattttgcggcgagaa
gcgggcttatctgcagatgattccccggtatccgagtcggcgggagctggatcgggtggc
gtcccaaatgtcagtgctgatgggggggatgccaactctctcctcagccgagtgtcaatg
gccacccccgtcgcacccccggccaccgcagccccaaaagtggtggcagcatcaggtggg
gaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggaccctgtc
ctctacccactctactataacggcctgaagaagtttattgagtctgtcctggactgccac
agagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggagctggtc
tacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgaccaggag
tgttactacgaggaggacctccgcatcctctcgagcatgtccaagaaggaacacatgaag
ggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcccgagac
tcctaccagctgctgaagaggcaccttcaggaacgtcagaacaaccagatctggaatatt
atacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagtcagatt
gatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagccaaggtg
ttctatggtcttctgaaggagccagagatcgaggtgcctctggatgatgaggatgaggag
gcagagaacgaggagggcaaacccaagaagaagaaacctaagaaggacagcatgggctcc
aagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctccccgagctg
aaggactctgacaagctggacaagatcatgaacatgaaggaggccactaagaagatccgt
ctgggcccagaaaacctaccctccatctgtttctactccttcctcaacgcttaccagggt
ctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgctgactcc
accgttagggtgtggagcgtcacccccaagaaactacgccgggtcaaatctgcagcagac
ctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgagaagacg
gccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagcttcagc
cctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtggagtctg
cagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggacactcag
ttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgtctgtgg
gcgactgaccactatcagcccctgcgtatgttcgctggtcacctggctgacatcacgtgc
acccgcttccaccctaactccaactatgtggccacgggttcagctgaccgtaccatccgc
ctctgggacgtcctgactggaaactgtgtccgcatcctcaccggtcacaagggccccatt
cattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgatgggagg
gttctactgtgggatgttggtcacggcctcatggtcggagagctgaagggacatgctgac
accatctatgccctcaagttcagcagggacggagagatactagcctcaggctcaatggat
aacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggatgacttc
accgcggcaacaggtcacatccatctaccagagaactcccaggagctgttgctaggcacc
tacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaacctactgctg
gctgcaggggcctacaacccatga
DBGET
integrated database retrieval system
