Salmo salar (Atlantic salmon): 106588780
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Entry
106588780 CDS
T04363
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106588780
04121 Ubiquitin system [BR:
sasa04121
]
106588780
Enzymes [BR:
sasa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
106588780
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
106588780
Ubiquitin system [BR:
sasa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
106588780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
TEN_NHL
zf-RING_5
zf-C3HC4
zf-RING_2
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
106588780
NCBI-ProteinID:
XP_014033659
UniProt:
A0A1S3Q2L8
LinkDB
All DBs
Position
ssa27:22673533..22719449
Genome browser
AA seq
839 aa
AA seq
DB search
MASFSDSDLQTCPLCKELCGSSSTPISSNSSTSSSSSHSSSSSFSSRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLSCPTCNQKVSISEAGVDSLPSSNFLFSNLLDVVVSSEEQLQLGQN
TNGHHRGVGVGSIPRFHHPHGGLLRPHRLGEPTCSSCDEGNPASSHCLDCQEYLCDNCVR
AHQRVRLTKDHFIERLAESLHQHQAGRGKVIPIGGGGEGGGGVGVSLAQSFHYNFSLLPL
FQDRMSFCQNHDNEVFLFFCETCSVPICRECSVGRHVGHSFVYLQDAVQDSRAITIQLLA
DAQQGRQAVQLSMEKAQAIVEQVEIKAKVVQTEVKNIILRHKKALEERECQLLWRVEKIR
QLKAKSLYLQVEKLHQNLTKLDSTIAAVTQVLDEGRHLDVLLARERMLTQIQELKSLRGL
LQPQEDDRFMFMPPDQALYIAIQSMGMISSGAFATVTKAHGEGLKTALRGKPASFTVIGY
DHDGEPRLSGGDAVSAVVMAAVDGNLSAAEVCDHLNGSYTVSYLPKAEGEYLVSVLVCNQ
HIMGSPFKVLVKSGRSYGALGSPVSAFGGEGEGEGQLCRPWGISVDKEGFVVVADRSNNR
VQIFKPCGAFYHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFDGQFMLK
FGEKGTKNGQFNYPWDVAVNSAGKILVSDTRNHRVQLFGPDGSFINKYGFEGALWKHFDS
PRGVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRII
VADSRNHRVQVFEPNGNFLCKFGMQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattctcagactccgacctgcaaacctgtcctctctgcaaggagctctgtggc
tcctcctccactcctatttcctccaactcctccacctcatcctcctcctctcattcctcc
tcctcgtcgttctcctcccggcgcctccatgtcctcccctgcctccacgccttctgcagg
cagtgtctggagggtcagcgcagccctggggaccctctcaaactcagctgccccacctgc
aatcagaaggtctccatctccgaagccggagtggactccctcccttcctccaacttcctc
tttagtaaccttctggacgtggtggtgagttccgaggagcagctccaactcggccagaat
accaacggccaccaccggggggtcggcgtgggctccatacccaggttccaccacccccac
ggcgggctcctccgcccgcaccgcctgggagagcctacgtgcagctcctgtgatgagggg
aacccggccagctcccactgcctggactgccaggagtacctgtgtgataactgcgtccgt
gcccaccagagggtccggctgaccaaggatcacttcattgagaggctagctgagagcctg
caccagcaccaagcgggtcgaggcaaggtcatccccatcggaggaggtggagaagggggg
gggggtgtgggcgtctccctggcccagtcctttcattacaacttctccctgctacctttg
ttccaggacaggatgagcttctgtcagaaccacgacaacgaggtgtttctgtttttctgt
gagacgtgctcggtgccgatctgtagggagtgtagtgtgggcagacacgtgggccacagc
ttcgtctatcttcaggacgctgtccaggattccagagccatcaccatccagctactggcc
gacgcacagcaaggaagacaagctgtacagctgagcatggagaaagcccaggccatagtg
gagcaggtagagatcaaggccaaggtggttcagacagaggtgaagaacatcatcctcaga
cacaagaaagccctggaggagagagagtgtcagctactctggagggttgagaagatccgc
cagctgaaagccaagtctctgtacctgcaggtagagaagctgcatcaaaacctgaccaag
ctggacagcaccattgcagccgtcactcaggtgctggacgagggccgtcacctggacgta
ctgctggccagagagcgcatgctgacccagatccaggagctcaagtctctgagaggactg
ctgcagccgcaggaggatgacaggttcatgttcatgcctccagaccaggccctgtacata
gccatccagtccatgggcatgatcagtagcggagcattcgctaccgtcaccaaagctcac
ggagagggcctaaagaccgcactccgcggcaagcctgcctccttcaccgtgattggctac
gaccatgacggggagccccgcctctcaggcggtgacgcagtgtcagcagtagtgatggca
gcagtagatggtaacctgtcggctgccgaggtgtgtgaccacctgaacgggtcatacaca
gtcagctatctgcccaaagcagagggagaatatctggtgtcagttctggtctgtaaccag
cacatcatgggcagcccctttaaggtgctggtgaagtctgggcggagctatggcgccctg
gggtccccggtgtctgcgtttggtggtgagggggagggggaggggcagctgtgtcgcccc
tgggggatcagcgtggacaaggagggattcgtggtcgtggccgaccgcagtaacaaccgc
gtacagatctttaagccgtgcggtgccttctaccacaagttcggctccctgggttctcgc
cccggtcagtttgaccgtccagcgggcgtggcatgcgacagccaacgccggatcatcgtg
gcggacaaagacaaccaccgcgtgcaggtgttcactttcgacgggcagttcatgctcaag
ttcggcgagaagggcactaagaacgggcagttcaactacccctgggatgtggcggtgaat
tctgcagggaagatactggtctctgacaccaggaaccaccgcgtccagctctttggccct
gatgggtccttcatcaacaagtacggctttgagggcgctctgtggaaacactttgactca
ccgcgcggcgtcgccttcaaccacgaggaccacctggtcgtcaccgacttcaacaaccac
cgtctgctggtgatccggccggactgccagtctgcccggttcttgggctcagagggaacc
ggtaacgggcagttcctgcgaccgcagggcgtagctgtggaccaggagaaccggatcatc
gtggctgactcgaggaaccaccgggtgcaggtattcgagcccaacgggaacttcttatgt
aaatttggcatgcaagggagtggcttcggacagatggaccgcccctccggtgttgccgtg
acgccagacggagttatcgtggtcgtcgatttcggaaacaaccgcatcctcaagttttga
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