Salmo salar (Atlantic salmon): 106588939 Help Entry 106588939         CDS       T04363                                  Symbol col1a2 Name (RefSeq) collagen type I alpha 2 chain   KO K06236   collagen type I alpha Organism sasa  Salmo salar (Atlantic salmon) Pathway sasa04510   Focal adhesion sasa04512   ECM-receptor interaction sasa04518   Integrin signaling sasa04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:sasa00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     106588939 (col1a2)    04518 Integrin signaling     106588939 (col1a2)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     106588939 (col1a2)   09142 Cell motility    04820 Cytoskeleton in muscle cells     106588939 (col1a2)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sasa00536]     106588939 (col1a2) Glycosaminoglycan binding proteins [BR:sasa00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    106588939 (col1a2) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  106588939 NCBI-ProteinID:  XP_014033985 UniProt:  A0A1S3Q205 LinkDB All DBs Position ssa27:complement(30169231..30193468) Genome browser AA seq 1356 aa AA seqDB search MLSFVDNRILLLLAVTSFLASCQSGGLKGPTGVKGPRGDRGPQGRNGRDGKDGLPGVAGP PGPPGLGGNFAAQFDGGKGSDPGPGPMGLMGSRGPNGPPGSPGPQGFTGHAGEPGEPGQT GPIGARGPPGAAGKPGEDGNNGRPGKPGDRGGPGTQGARGFPGTPGLPGMKGHRGYNGLD GRKGESGSGGAKGETGAHGANGNPGPAGSRGLNGERGRAGPAGPAGARGADGSTGPAGPA GPLGAAGPPGFPGAPGPKGEIGGVGANGPSGPQGGRGEPGTNGAVGPVGPVGNPGNNGIN GAKGAAGLPGVAGAPGFPGPRGGPGPQGPQGSTGARGLGGDPGPSGQKGDSGAKGEPGHS GVQGPAGPAGEEGKRGSTGEVGATGPAGLRGARGGAGTRGLPGLEGRGGPIGMPGARGAT GPAGIRGAPGDAGRAGESGLTGARGLPGNSGQGGPPGKEGPSGAAGLDGRTGPPGPTGPR GQPGNIGFPGPKGPGGEAGKGGDKGPTGATGLRGGPGADGNNGAPGPAGVVGNAGEKGEQ GPSGAPGFQGLPGPAGPAGEAGKAGNQGMPGDQGLPGPAGVKGERGNSGPAGSAGSQGAI GARGPAGTPGPDGGKGEPGSVGIAGGPGHQGPGGMPGERGAGGTPGPKGEKGEGGHRGLE GNMGRDGARGAPGPSGPPGPSGANGEKGESGSFGPAGPAGLRGPNGERGEGGPAGPPGFA GPPGSDGQPGPRGDKGPAGGKGDVGPAGPAGPAGQSGPSGASGPAGPPGGRGDAGPSGLT GFPGAAGRVGGPGPAGISGPPGSAGPAGKDGPRGLRGDPGPGGPQGEHGQIGPAGIAGDK GPTGESGPPGAPGTAGPQGVLGHAGFVGLPGSRGDKGLPGGPGAVGEPGRLGPAGASGPR GPAGNIGMPGMTGTQGEAGREGSPGNDGPPGRPGTAGFKGDRGEPGSPGALGSSGQPGPN GPSGAVGRPGNRGESGPTGNGGPVGAAGARGAPGPAGPRGEKGGAGEKGDRGMKGLRGHG GLQGMPGPNGPSGETGSAGITGPAGPRGPAGPHGPPGKDGRAGGHGAIGPVGHRGSPGHL GPAGPPGSPGLPGPAGPAGGGYDQSGGYDEYRADQPSLRAKDYEVDATIKSLNSQIENLL TPEGSKKNPARTCRDIRLSHPEWSSGFYWIDPNQGCIADAIKAHCDFSTGHTCIHPHPES IARKNWYRSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLANQATQNITY HCKNSVAYMDGENGNLKKAVLLQGSNDVELSAEGNSRFTFNVLEDGCTRHTGQWSKTVIE YRTNKPSRLPILDIAPLDIGGADQEFGLDIGPVCFK NT seq 4071 nt NT seq  +upstreamnt  +downstreamnt atgctcagctttgtggataaccggattctgttgctgcttgcagtaacttcatttctagca tcatgccaatcggggggactcaagggcccaacgggagtgaaaggacctcgaggtgacagg ggtccccaaggccgtaatggaagagatggtaaagatggactccccggcgttgccggcccc cctggtccccctggacttggaggaaactttgctgctcagtttgatggaggaaaaggcagc gaccccggacctggacccatgggtttgatgggatctagagggcccaacggacctcccgga tcccctggaccccaaggattcacaggacacgctggagagcctggagagcccggacagact ggccccattggtgctcgtggacctcctggagccgctggcaagcccggtgaggatggtaac aacggcagacctggaaagcctggtgacagaggtggccctggaactcagggtgctcgtgga ttccccggaactcctggacttcctggaatgaagggacacagaggttacaatggtctggat ggacgcaagggagagtctggttcaggaggtgctaagggtgagacaggtgcccatggagct aacggaaaccccggaccagctggttctcgtggtctgaatggtgagagaggccgtgccggc cctgctggccccgctggtgcccgtggtgctgatggaagcactggacccgccggccctgct ggtcctcttggagcagctggcccccctggtttccctggagcccctggccccaagggagag attggaggtgttggagccaatggcccatccggacctcagggaggcagaggagagcccggt actaatggagccgttggccccgtcggtcccgttggtaaccctggtaacaacggtatcaac ggcgccaagggagctgctggtctccccggtgttgctggagcccctggtttccccggccca agaggaggtcccggcccccagggccctcagggatccactggagcaagaggccttggtggt gaccctggaccctctggacaaaaaggagattctggtgctaagggagagcctggtcactct ggtgtccagggtcccgctggtcccgctggtgaggagggcaagagaggctcaactggtgag gttggtgccaccgggcccgctggtctgcgtggagcaagaggaggtgctggaactcgtggt ctgcctggtctggagggaagaggtggtcccattggtatgcccggagctcgcggagccacc ggccctgctggtatccgtggagcccctggtgatgccggccgtgctggcgagtctggtctg actggagccagaggcctgcccggaaactctggacagggtggacccccaggcaaggaaggc ccatctggtgctgctggtctggacggacgcactggtccccccggcccaactggacccaga ggccagcccggtaacatcggattccccggccccaagggacctggaggtgaggctggcaag ggtggtgataagggaccaactggtgcaactggtctgagaggcggtccaggtgctgatggt aacaatggagcccccggccctgctggagttgttggtaacgctggtgagaagggagagcag ggaccctctggtgctccaggtttccagggtctgcccggccccgctggacctgctggagag gctggcaaagctggcaaccaaggtatgcctggagaccagggactccctggacccgctggc gtcaagggagagcgtggaaactctggtcctgctggctctgctggatctcagggagccatc ggtgctcgtggacctgctggaactccaggccccgatggtggcaagggagagcctggttct gtcggcattgctggtggccctggacaccaaggacccggtggcatgcccggtgagcgcggt gccggtggtactcctggacccaagggtgagaagggtgagggtggacacagaggacttgag ggtaacatgggaagagatggagcccgtggtgcccccggaccaagtggaccccctggacct tccggtgctaatggtgaaaagggtgagtctggctccttcggccctgccggacctgctggt cttcgtggacccaatggagagcgtggagagggtggacctgccggacctcccggcttcgcc ggaccccctggttctgatggtcagcctggacctagaggagacaaaggacccgctggtgga aagggagatgtcggccccgccggccctgctggacctgctggccaatctggaccttctggt gctagtggacccgctggcccccctggtggtcgtggtgatgctggaccttctggtctgact ggtttccctggtgctgccggtagagttggaggccccggtcccgctggtatttctgggccc cctggctccgccggtcccgctggtaaggatggccctcgtggtctccgtggtgatcctggt cccgggggacctcagggagagcatggacaaattggacccgctggtatcgctggagacaag ggacccactggagagagcggtcctcccggtgctcctggtaccgctggaccccaaggtgtg ctcggacacgctggcttcgttggtctgcctggttcccgtggtgacaagggtcttcctggc ggtcctggtgctgtgggtgagcctggtagacttggacccgctggtgcctctggaccccgt ggtcccgctggtaacattggcatgcccggtatgactggtactcagggagaggctggacgt gagggtagccctggcaacgatggacctcccggccgtcccggaactgctggcttcaagggt gaccgtggtgagcctggttctcctggagcccttggaagctctggtcaacccggacctaac ggaccctccggcgccgtcggcagacctggaaaccgtggagagtctggcccaactggaaat ggtggtcccgtcggtgctgctggtgcccgtggtgcccccggccccgctggtccccgtgga gagaagggtggggctggagagaaaggagacagaggcatgaagggtctgcgtggacatggt ggtctccagggaatgcccggaccaaacggaccatctggtgagactggctctgctggtatc actggacctgctggacccagaggccctgccggaccccatggtccccctggtaaggatggt agagctggaggtcatggtgctatcggacctgttggacaccgtggttcccctggacatctc ggacctgctggtccccccggctctcctggtcttcccggacccgcaggtcccgctggtggc ggatacgatcagtctggtggttacgatgagtacagagccgaccagccctctctcagggcc aaggactacgaggtggacgccaccatcaagtccctaaactcccagatcgagaacttgctc acccccgagggttccaagaagaaccccgcccgtacctgcagagacatcagactcagccac cccgaatggagcagcggtttctactggatcgaccccaaccagggttgcatcgctgacgcc atcaaggcccactgcgacttctccaccggacacacctgcatccaccctcacccagagagc atcgcccgcaagaactggtacaggagctctgagaacaagaagcacgtctggttcggagag accattaacggtggtactgagtttgcgtacaatgacgagaccctgagcccacagagcatg gccactcagctggccttcatgcgtctcctggccaaccaggccacccagaacatcacgtac cactgcaagaacagcgtggcgtacatggacggagagaacggcaacctgaagaaggccgtg ctcctgcagggctccaacgacgtggagctgagtgccgagggcaacagtcgcttcactttc aacgttttggaggacggctgcactagacacactggccagtggagcaagacagtcattgaa tacagaacaaataaaccatctcgcctgcccatcctcgacattgcacctttggacattggt ggagctgatcaagagtttggtttggacattggcccagtctgtttcaaataa

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