Salmo salar (Atlantic salmon): 106589004
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Entry
106589004 CDS
T04363
Name
(RefSeq) zinc finger transcription factor Trps1-like
KO
K22040
atypical GATA-binding protein TRPS1
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sasa03000
]
106589004
Transcription factors [BR:
sasa03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
106589004
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Znf_C2H2_Trps1_4th
zf-C2H2_Trps1_3rd
zf-C2H2_Trps1_1st
zf-C2H2_Trps1_2nd
zf-C2H2_Trps1_5th
GATA
zf-C2H2_ZNF462_11
DUF7573
Zn_Ribbon_TF
Motif
Other DBs
NCBI-GeneID:
106589004
NCBI-ProteinID:
XP_014034098
UniProt:
A0A1S3Q2A2
LinkDB
All DBs
Position
ssa27:complement(34565666..34761019)
Genome browser
AA seq
1598 aa
AA seq
DB search
MLSRDMVRKKNPPLRSFGGEEEGEGEALAAEATGPESEDSAGSRSSEPNGADGLLPAELG
RAHVPVPDEQEDSSSSPGSVSGSIKRDGGGRGGGGVGTAATVNTDRPVFNYPSHKKGGNV
ASFPCHEVTDSNLPALPSWAGPDGAVSLSPLRSEPDEGDGRQARSPAGELLLGNAGERGG
GERVGVREGLLLGDRGRGVIIQGVTSNGEDKDPSYSPTGGISVHQDRVEGSGYPLLCPLH
PHRGAGEGAENITPSPLGAETGVAPPCSPKLQDFKCNICGYGYYGNDPTDLIKHYRKYHL
GLHNRTRQDAELDTKILALHNMVGFSPQSQHAKDTTRPPSYTALTGAPQDSTGSPRLLLN
GTYDIQVTLGDTFIGIGRKTPDCQGNTKYFRCKFCNFTYMGSSSVELEQHFLSAHPNKMK
SQPQPPPLPNDDKPSDRKGNYVTRGGGVEGAELGKWEDRVAVRAEDDSVAGYSVPIHATD
SPGWTGSDGGATDSPGWTGADGRATDSPGCTGSDGGATAVAYYRCKYCSFSCESPSSQRL
LEHYEKRHRQPGGERGGTREGSPAKRERRSSKSRDGERDPHSRRKDKTGTSGSMGATDPE
MVVTSYNCQFCDFRYSMNHGPEVIVVAPLLRHYQQAHSIHKCTIKHCPFCPRGLCSPEKH
LGEISYPFACRKSACSHCALLFLQLSPQGSSPTPRPSVTHLCDQCPYATSDIDLLLLHYD
STHATHGVLEVKPEQEGAETGRYSAPKGPHGEHSCTKCHFITDVEEEIFRHYRRVHGCCR
CRHCSFTASDTLSLLDHFNTAHCKETSASSSHPSASFVTTNGYSATTPSTLSIKEESKGD
LKLYSLVPPESRAAEAGPGAEGVKSEALDEKEAQGSKGWMEAREAQVQAHAAGLVWVPKE
RAGDILRGSPAQFPQGALSLLNAVAASQEHHHQQQKGGSAVLRDSPGLVFSLGGVDTKAF
LPGQTPGGADKPGHLAQQYSSPTDGKAKEESQSLLRRRRGSGVFCANCLTTKTSLWRKNA
NGGYVCNACGLYQKLHSTPRPLNIIKQNNGEQIIRRRTRKRLNPDPLPTEPVGSKQQRVS
SEERLNGSPLERRPGEDGPGSEGVPVPRKGEPQNSLGQYEAYGSSGFKGHPSPRSTHSFL
VSQTLEIHKRMPPLHIHNKNPAEGGAERNGVGSAGVHHTGLEGKGSLSTERGSPIEKYMR
PSKQASYSPPGSPIEKYQYPFFSLPFIHNDLQSESDWMRFWTKYKMSVPGNPQYLGHMPG
LPNPCQSFVPYHTFSLPPHFPLPPSAGPESDIPLDLAIKHSKPAPTANGSTASAVTIKEK
SSSADKRALPTVPAGKEDEKHREQQETREEKVEEGASPQPSPPPDVAAKPERVDQGTQDD
LTSKERLDQGTQDELTSKERLDQGTQDELTSKERVDQGTQDELTSKERLDQGTQDELTSK
ERVDQGTQDELTSKERVDQGTQDELTSKERVDQGTQDELTSKERVDQGTQDELTSKERVD
QGTQDELTSKERVDQGTQDELTSKCIHCGILFLDEVMHALHMSCHADGGPFQCSICLHAC
ADKYDFTTHIQRGLHLPTVEAEADAEADAEADAPNDSV
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgctcagcagagatatggtgaggaaaaagaacccccctttgagaagcttcggcggtgag
gaagaaggagaaggtgaggctctggccgcagaggccaccgggccggaaagcgaggacagt
gccgggagccggtcctcagagcccaacggtgccgacgggctgctgccggccgaactaggc
cgggcccacgtgccagtcccagacgagcaggaggactcctcttcctccccgggctccgtc
tcaggctccatcaaacgggacggaggagggaggggcggcggaggagtgggaacagcggcg
acagtcaacaccgacaggcctgtctttaattaccctagccacaagaagggaggaaatgta
gcgtccttcccctgccatgaggtgacagactcaaatctgccggcgctcccatcctgggcc
gggcccgacggggctgtgtctctgtctccgctcagatcagaaccagatgagggggacggg
agacaggcacgcagcccggcgggggagctgctgctggggaatgccggggagagaggaggg
ggagaaagggtgggtgtcagggaggggttgctgctgggcgaccgagggaggggcgtcatc
atccagggcgtcaccagtaacggggaggacaaggacccctcctacagccccacagggggg
atctcagtccaccaggacagggtggagggctctggataccccttgctatgccccctccac
ccacataggggggcaggtgagggggccgagaacatcacgcccagccccctgggggctgag
acaggggtagccccaccctgctctcccaaactgcaggacttcaagtgcaacatctgtggg
tacggttactacgggaacgaccccacggacctgatcaagcactatcggaagtaccacctg
ggcctgcacaaccgcacgcggcaggacgcagagctggacactaagatactggccctgcac
aacatggtgggcttctccccacagagccaacacgccaaagacactacacggcccccgtcc
tacaccgccctgaccggggcgccacaggactctacagggtccccacgcttgttacttaac
ggcacctacgacatacaggtgacgttgggagataccttcatcggcatcgggaggaagact
ccggactgtcagggaaacaccaagtacttccgctgcaagttctgtaacttcacctacatg
ggaagctcctcagtggagctggagcaacacttcctttctgcccaccccaacaagatgaag
tcccagccccagcccccgccgctgccaaacgacgacaagccctcggacaggaaggggaac
tatgtgacacggggtggtggcgtggagggggcggaattgggaaagtgggaggaccgggtg
gcggtccgtgctgaggacgactcggtggctggctactccgtccccatccacgccacggac
tcgccgggctggacggggtctgacggtggggccacagactcacctggctggacgggggcc
gatggcagggccacagactcgcctggctgtacggggtccgacggcggcgccacagcggtg
gcctattaccggtgtaagtactgcagcttcagctgtgagtcgcccagctcacaacgcctc
ctggagcattatgagaagagacacagacagcctggaggagaaagaggggggaccagggag
ggcagcccagccaagagggagcgaaggagcagcaaatccagggacggagagagagacccc
cacagccggaggaaagacaagacaggaacgagtggctcgatgggcgcaacggatccggag
atggtggtaaccagctacaactgccagttctgtgacttccgctactccatgaaccacggg
cctgaggttattgtggtggcgcctctgctccgccactaccagcaggcccacagcatccac
aaatgcaccatcaagcactgcccgttctgcccgcgtggcctctgcagccccgagaagcac
ctgggggagatctcctacccgtttgcttgtaggaagagcgcatgctcccactgcgccctc
cttttcctccagctgtccccccagggcagctccccaactcccaggcccagcgtcacccac
ctgtgtgaccagtgtccctacgccaccagcgacatcgacctgcttctgctgcactacgac
agcacccatgccacccacggcgtgctggaggtcaagcccgaacaggagggagctgagacg
gggaggtactctgcccccaagggccctcacggggagcactcatgcaccaagtgccatttc
atcacagatgtggaggaggagatctttcgtcactacaggagagtccacggctgttgtcgg
tgccgccactgcagcttcaccgcctccgacaccttgtcactgctggatcacttcaacacg
gcccactgcaaagagacctccgcctcctcctcccatccctccgcttccttcgtcaccacc
aacggctactccgccacaaccccctccaccctcagcatcaaggaggagagcaagggcgac
ctcaagctctacagtctggttcccccagagagccgtgccgctgaggcagggcccggggcc
gaaggggtgaagagcgaggccctggacgagaaggaggcccaggggtccaagggctggatg
gaggccagagaggcccaggtccaagctcatgcagcaggccttgtgtgggtgcctaaggag
cgggccggggacatcctgaggggtagtccggcccagttcccccagggcgccctgagtcta
ctcaacgccgtggctgcctcccaggagcaccaccaccagcagcagaaggggggttcggcg
gtgctcagggactccccaggcctggtattcagtctggggggggtcgacaccaaggccttc
cttccaggacagactcccggtggggccgacaaacctgggcatctggcgcaacagtactcc
tcacccaccgatggcaaggccaaggaggagtcccagtcactcttacggagacgtcgaggc
tcgggggtgttctgtgccaactgtctgaccaccaagacctctctgtggaggaagaatgcc
aacgggggatatgtgtgcaacgcatgtggcctctatcagaagctccactcgactccccgg
ccgctgaacatcatcaagcagaacaatggcgagcagatcatccgccggcgcacgcggaag
cgcctcaaccccgaccctctgcccaccgaacctgtgggctccaagcagcagagggtcagc
agcgaggagcgcctcaatggcagtcccctggagcgccggccaggagaggatgggccaggc
tcggaaggagtgcctgtccctcgtaaaggggagccccagaattccctgggccagtacgag
gcctacgggtcctctgggttcaagggtcaccccagcccccgctccacccactccttccta
gttagccaaaccctggagatccacaagcgaatgcctcctttgcacatacacaacaagaac
cctgcagagggaggggcggagaggaacggggtgggctcggctggggtccatcacacgggc
ttggaggggaagggtagcttgtccaccgagaggggtagccccatcgagaagtacatgcgt
ccctccaaacaggccagctactcgccaccgggcagccccatcgagaagtaccagtacccg
ttcttcagcctgcccttcatccacaatgacctgcagagcgagtccgactggatgcgcttc
tggactaagtacaagatgtctgttccgggcaacccacagtacctaggccacatgcctggt
ctgcccaacccttgccaaagctttgtgccttaccatacctttagcttgcccccacacttc
cctctcccgccctccgccggtcccgaaagcgacatccctctcgacctggccatcaaacat
tccaaaccggcccccaccgccaacggctccactgcctctgccgttaccatcaaggagaag
agcagcagcgccgacaaacgggccttgcccacggtcccggcagggaaggaggatgagaag
catagagagcagcaggagacaagagaggagaaagtagaagagggggcatccccccagcct
tctcctcccccagacgttgcagccaagccggagagggtcgaccagggcactcaggacgat
ctgaccagtaaggagagattggaccagggcactcaggatgagctgaccagtaaggagaga
ttggaccagggcactcaggatgagctgaccagtaaggagagggtggaccagggcactcag
gatgagctgaccagtaaggagagattggaccagggcactcaggatgagctgaccagtaag
gagagggtggaccagggcactcaggatgagctgaccagtaaggagagggtggaccagggc
actcaggatgagctgaccagtaaggagagggtagaccagggcactcaggatgagctgacc
agtaaggagagggtggaccagggcactcaggatgagctgaccagtaaggagagggtggac
cagggcactcaggatgagctgaccagtaaggagagggtggaccagggcactcaggatgag
ctgaccagtaagtgcatccactgtggcatcctcttcctggatgaagttatgcacgccctg
cacatgagctgccatgctgatggagggcccttccagtgcagcatctgcctgcatgcctgc
gcagacaagtacgacttcaccacacacatacagagagggcttcacctgccaaccgtcgag
gctgaggccgatgctgaggccgatgctgaggccgatgctccaaacgattctgtgtga
DBGET
integrated database retrieval system
