Salmo salar (Atlantic salmon): 106589020
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Entry
106589020 CDS
T04363
Name
(RefSeq) ribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106589020
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
106589020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_4
zf-CCCH_2
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
106589020
NCBI-ProteinID:
XP_014034134
UniProt:
A0A1S3Q3Z3
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All DBs
Position
ssa27:35497908..35513414
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AA seq
700 aa
AA seq
DB search
MKIGAISTLSPVKDVLPWKEFSHTARLSPTEPHDTVGWLSTLPALHNHHHPPCPICERMH
PSGTHCSAPEESGKTPAEPGEAQLDFYRKLGYSPAQVWTVLQKFGLNTDTNRVLGELVRT
GASPEGIEKEREKEGAPSTMSILVARGETLSNLPLTPPPSQGDVPSEEGDALRPIVIDGS
NVAMSHGNKEMFSCLGIQLAVNFFLDRGHTDITVFVPSWRKEQPRPDVLIRDQHILRELE
RKKIVVFTPSRRVAGKRVVCYDDRFIVKLAHETSGIIVSNDTYRDLQGERQDWKRFIEER
LLMYSFVNDKFMPPDDPLGRHGPTLENFLLKVPRLPRKQPCPYGRKCTYGMKCKFYHPER
ANQSRCSLADELRKKAKLSLSEHKHPTSGAGPAYGLSLEERTAQKLPLEQSYGSLKKGHI
SENVLLIKGSHRSSRRFPTKDKANRHFMTDLDSAMPSGSHSPTDLDSALPSGSQERLDSG
LGSFESQVSDPSRDHCDRYGKAGYRNCLSLPSMRQQIYSLPSNLPSSCSSHPPQPLLGPS
AGYQHRSRGPASTHNNTHSPHNSMGPASTYHPGKITYRPPYYLSYGAPIYPVGKHQYRYP
DDFQQESRAHPPQQTYWSDPFGTYPQTLLSTAQVEKQRHWLLPRTQPHPHGEGREREEVR
MKLLAIFNGCLVDKVMDMFPQLMDPQRLAAEILILQSQGL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgaagattggtgctatctcaacgctgagtccggtcaaagatgtcttgccatggaaagag
ttctcccacacagcccgtctgagccccacagagccacacgacacagttggatggctgtcc
actctgcctgcccttcacaatcatcatcatccaccctgtcccatctgtgagagaatgcac
cctagtggtacccactgctctgccccggaggagagcggcaagacccccgcagaacctgga
gaggctcagctggacttctaccgtaaactgggttactccccagcacaggtctggaccgtg
ctgcagaagtttggcctgaacacagacactaacagggttctgggggagctggtgcggacg
ggagccagcccagaagggattgagaaggagagggagaaggagggagccccatctaccatg
tctatcctggtggcccgaggggagaccctcagtaacctgcccctcacccctccacccagc
cagggcgatgtacccagtgaggagggagatgccctgagacccatagtgatcgatgggagc
aacgtggctatgagccacgggaacaaggaaatgttttcctgcctgggaatccagctggcg
gtaaacttcttcctggacagaggtcatactgatatcaccgtgtttgttccgtcatggagg
aaggagcagcctagaccagatgtcctcatcagagatcaacacattttgcgtgagctggag
aggaagaagatcgtggtgttcaccccttcgcggcgggtagcaggcaaacgggtggtctgc
tatgatgaccgcttcatcgtcaagctggcgcatgagacctccggcatcatcgtgtccaac
gacacctaccgtgaccttcagggcgagaggcaggactggaagcgcttcattgaggagagg
ctactcatgtactccttcgtcaatgacaagttcatgccccctgatgaccctctgggtcgc
catggtcccaccctggagaactttctactgaaggttcctcgtttaccacggaaacagccg
tgcccttatggaaggaaatgcacttacgggatgaagtgtaaattctaccacccggaacga
gccaaccaatcccgttgctctctggctgacgagctgcggaagaaggccaagctatcttta
tcagaacataaacaccccacctcaggtgctggacctgcctatggcctttctctggaggag
aggacggctcagaaactgcctctagaacagagttatggctccctgaagaaaggccacatc
agtgagaatgtgcttctgatcaagggaagccatcgttccagccggaggttcccaactaag
gacaaggccaaccgacacttcatgaccgatctggactcggccatgcccagtggctctcac
tccccgacagacctggactcggccctgcccagtggctctcaggagcggctagattctggt
cttggctccttcgagagccaggtgtctgacccctccagggaccactgtgaccgttatggg
aaggctgggtacaggaactgcctgtccctccccagtatgagacaacaaatctattccctg
ccaagcaacctgccttctagctgcagctctcatcctcctcagcctttactgggccccagc
gcaggataccaacatcgcagcaggggcccagccagcacccacaacaacacccacagccca
cataacagcatgggcccagccagcacctaccacccaggcaagataacctacagaccaccc
tattacctcagctatggggcaccgatatatccagttgggaagcatcagtacaggtacccc
gatgacttccaacaggagagcagggcccaccctccacagcagacctactggtccgatccg
ttcgggacttatcctcagactctccttagcactgctcaagtggagaagcagagacactgg
ctactccctcggacacagccccacccccacggggagggcagggagagagaggaggtcagg
atgaagctgctggctatctttaacggctgtctggtggacaaggtcatggacatgtttccc
cagctcatggacccacagagattagctgctgagatcctcatcctgcagtctcagggcctg
tga
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