Salmo salar (Atlantic salmon): 106589405
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Entry
106589405 CDS
T04363
Symbol
msh2
Name
(RefSeq) mutS homolog 2
KO
K08735
DNA mismatch repair protein MSH2
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106589405 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106589405 (msh2)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106589405 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
106589405
NCBI-ProteinID:
XP_014034833
UniProt:
A0A1S3Q4C3
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All DBs
Position
ssa28:complement(7955276..7974812)
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AA seq
928 aa
AA seq
DB search
MAVQPKQSLSMDAAAEHGFLTYYFSMPEKPDTTFRVFDRGDYYTVHGTDALFAAKEVFKT
NGVIKTLGSGSRKLESVVLSKTNFEALVRDLLLVKQYRVEVYRNQSKTKDHSWQLEYKAS
PGNLSQFEEVLFGGAEGRGAGSAGVVAVRLAVGGDGQRVVGVGYVDASLRTMGVCEFLDG
ETFCNLEALLVQLSPKECLLPQGDNTDKIRQVVQRGGVLLSDRKRTEFSSKDMTQDLNRL
LRTRKGEANACNVLPELDKQVAMSCLAAVVRYLELLSDQSNFSSFSLTTLDLSQYMRLDN
AAVQALNLFQGSPDDTSGAHSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRIEERLDLVE
CLVNDGEARQTLQDDLLRRFPDLHRLSKKFHRLSATLQDCYRGYQAVGQIPALLLALEKH
QGSHQMLLEAVFISPLRDLQADFIKYQEMIETTLDMNQVEHHEFLVKASFDPVLSELREK
MDTLENSMQSVLNSAARELGLDAGKTVKLECNSVLGYYLRVTCKEEKSLRNNKTFTTLDV
QKNGVRFTNSKLSSLNEDYTRNREEYEEAQNAIVKEIISIAAGYVDPLQSLSDVLAQLDA
VVSFSVASVSAPVPYVRPRLLAADGRRLELQQARHPCLESDADTAFIPNDISFIQGEQSF
YIITGPNMGGKSTFIRQVGVISLMAQIGCFVPCEKAELSMIDSCLCRVGAGDSQLKGVST
FMSEMLETAAILRSATKNSLIIIDELGRGTSTFDGFGLAWAISEHIASKIGCFCLFATHF
HELTALATHHPTVRNLHVTALTTQHTLTMLYRVKPGVCDQSFGIHVAELACFPPAVVAMA
KQKAAELEEFQEEPSEEGGPEAKKRRSDKREGEVLIQSFLEKAKALPAVTMTDQEVKAEL
KAMKQELVAHNNAYITELLARSAPIHSN
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaaccgaaacagagcttgtccatggacgctgctgccgaacatggcttcctt
acctactacttttccatgccggagaagccagacaccaccttcagggtcttcgaccggggt
gactactacacggtgcatgggaccgacgcgctgttcgccgccaaggaggttttcaagacc
aacggagtcatcaagaccctgggctcaggtagccgcaagctggagagtgtggttctcagc
aagacaaactttgaggctctggtcagagacctgctgctggtgaaacaatacagagtggaa
gtctacaggaaccaaagcaaaaccaaggatcacagctggcaactggagtacaaggcgtct
ccagggaatctcagccagtttgaggaggttctatttggcggggctgagggaagaggggct
ggctcagcgggggttgtggccgtacggttggctgtcgggggtgacggacagcgcgtggtg
ggcgtgggctatgtggacgcgtccctaaggaccatgggagtgtgtgagttccttgatgga
gagactttctgtaacctggaggctctacttgtgcagctgagccctaaagaatgtctgcta
ccacagggtgacaacactgataaaatacgacaggtggtgcagcgtggcggtgtgttgctg
tcagacagaaagagaacagagttcagtagtaaagacatgacccaggacctcaaccgactg
ctacggaccaggaaaggggaggccaacgcctgcaacgttctgcctgaactagacaaacag
gtagccatgtcatgcctggcagcagtggttcgttacctggagttgctgtctgaccaatca
aacttcagctccttcagcttgacgacccttgacctgagccagtacatgaggctggacaac
gctgctgtacaggccctcaacctctttcagggttcccccgatgacaccagtggagcccac
tcattggccgggctactgaataagtgccgcacccctcagggccagcgattggtcaaccag
tggatcaaacagccactcatggacaagaacaggattgaggagagactggacctggtagag
tgtctcgtgaatgacggtgaggccagacagactcttcaggacgatctgttgcggcggttc
ccagatctccaccgcttgtccaaaaagtttcaccggctctcggcaacactgcaggactgt
taccgcggttaccaggccgtgggccagatccctgcacttctgttggctctggagaaacac
caaggaagtcaccagatgctgttggaggcagtgttcatctctcctctcagagacctgcag
gctgacttcatcaagtaccaggagatgatagagactacactggatatgaaccaggtggag
caccatgagttcctggtgaaggcgtcgtttgacccggtgctctctgagctgagggagaag
atggacacactggagaacagcatgcagagtgtactgaacagcgcagcacgggaactgggt
ctggatgctggtaagacagtgaagttggagtgtaacagtgtgttggggtattacctgagg
gtgacctgtaaagaggagaagagtctgaggaacaacaaaacgttcacaacgctggacgtc
cagaagaatggagtccggttcaccaacagtaagctgagttctttgaatgaagactacacc
aggaacagagaggagtatgaggaggctcagaacgccatcgttaaggagatcatcagcatc
gccgcgggctacgtggaccccctgcagtcgttgagtgacgtcctcgcccagctggatgcg
gtggtcagcttctctgtggcgtcagtctccgcccccgttccctacgtcaggccacgcctc
ctggctgcggacggcaggcgcctggagctccaacaggccagacacccctgtctggagtcg
gacgcagacacagccttcatacctaatgatatatccttcatacagggagagcagagcttc
tatatcatcacaggtcctaatatgggcgggaagtctaccttcatcaggcaggtgggcgtg
atctctctgatggctcagattggctgctttgtcccctgtgagaaggcggagctaagcatg
attgacagctgtctgtgccgtgtgggggcgggggatagccagctcaagggcgtgtctaca
tttatgtccgagatgctggagactgcagctattctccgctctgccacgaagaactctcta
ataataatcgatgagttgggtcgaggaacatctacattcgatggctttggtctggcctgg
gccatcagtgaacacatcgcctctaagattggctgcttctgtctgtttgccactcacttc
cacgagcttacggcgttggccacacaccaccccaccgtccgcaacctgcacgtcaccgct
ctgaccactcaacacacactcaccatgctctacagggtcaaaccaggtgtgtgtgaccag
agttttgggatccatgtggcggagttggcctgtttcccgccggcggtggttgccatggca
aagcagaaggctgcagagttggaggagtttcaggaggagcctagtgaggagggggggcca
gaggccaagaaacgacgcagcgataaacgggagggagaggtattgatccagtcgtttctg
gagaaggcgaaagctctgccggcagtcaccatgactgaccaggaggtgaaggcggagctt
aaagccatgaagcaggagcttgttgcccataacaacgcttacatcactgagctcctggca
cgctccgcccctatccactcaaactga
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