Salmo salar (Atlantic salmon): 106589586
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Entry
106589586 CDS
T04363
Symbol
usp42
Name
(RefSeq) ubiquitin specific peptidase 42
KO
K11855
ubiquitin carboxyl-terminal hydrolase 36/42 [EC:
3.4.19.12
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sasa01002
]
106589586 (usp42)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sasa04121
]
106589586 (usp42)
Enzymes [BR:
sasa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
106589586 (usp42)
Peptidases and inhibitors [BR:
sasa01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
106589586 (usp42)
Ubiquitin system [BR:
sasa04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
106589586 (usp42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
106589586
NCBI-ProteinID:
XP_014035207
UniProt:
A0A1S3Q733
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All DBs
Position
ssa28:15678967..15712805
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AA seq
1221 aa
AA seq
DB search
MTIVDRSSEKSDHESVGCKRSGSLTFPGGDGNGMDGGCSSWGAGGPSSSDTPRVKTGGCM
GPTPGATVYSSSAGITADRPKEQVVLTSGDGIALPQKVLFPAERLSLKWNQVNRIGSGLQ
NLGNTCFLNSALQCLTYTAPLSNYMLSREHSKTCHEPGFCMMCTMQNHITQVFANSGNVI
KPIGVLNELKRIAKHFRFGSQEDAHEFLRYTVDAMQKSCLPGSKLDRQTQATSFIHQVFG
GYLRSRVKCLNCKAVSDTFDPYLDVALEIKTAPSITKALEQFVKPEQLDGENAYKCTKCK
KMVPASKRFTIHRSSNVLTISLKRFANYNGGKIAKDVRYPECLDLRPFMSQSHGEPQVYV
LYAVLVHSGFSCHAGHYYCYVKASNGQWHQMNDSSVSVSDIRSVLNQQAYVLFYIRSPDL
KNGGDYNHMSRPPGQSSPRPILTPRVNIGPRHTNTGFIGPQLPPHMAKNTFHINGNGSLR
DFPSGSKPSTSSGGSSMGKTSYGLLSSSSSSSSSSSSHSLSRPTGIPDTAKRQKLSFFIG
QGKQIRPSSTSSSSYAQPSSCSSSQTTSDMSAPRAPCINGTPSVNGNGHGASFLVPYGQE
SSEESDQEGGSGLENGTTKPHVNGRKGGAVYGPVPRVLALKPNGISNGQATMHHNGSGAN
GTNGFSKLSQIGHQNGHHKVNGIKQPEKVNGHVLSPGLGPSISNGAESHHSDPSKEVYSA
TPSQDSPSQSLHSADSDSHLSSTPEKRTKTHSDPLPHHAPSTTANPPSSLADVGAKPPTD
AMRESSSTSNPGALPLQPTPHSLRTLVSPAFSQPLSGTGLGAPHSRSGEDVRETENSPAA
GLDGRLDGKPSSREGRDRMYSSDRDKGRDRLYSSDRDRDGDRLYSSDRDRDGERSRYHRD
MSRERNWDRDSDRYRHRRDHRDREHHRDREHHRSYRDRSASRDRHRESERRWERNAYHPR
DRCHHHYHRPRENRERDRREHSLPHREEPHGRSRWRGERGEGKRGYNPSQEETPLPIPLS
SNTKPSQPSTSPDLAPARPALEKRPDPLREDSFEERRAKKHKKSKKKKSKDKARRPENGT
SDVDSSDRAADGSRSSKHKKKKKKKKKRRRHDTDTEDEKSRSTQSSEGHRDPNAPREGRR
ASSSDEERASRKRRYQDDDGSDNSYPEKHHRSDDDDKDRFFSRNISPTATSHNASHHHLN
GHTGNGFSRPNGNSHGCSTNE
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgaccatagttgacagatcttcagagaagtctgaccacgagtcagtcgggtgcaagcgc
tccggatcgctgaccttccccggcggcgacgggaacgggatggacggcggctgctccagc
tggggggcggggggcccctcgtcctccgacacccccagggtgaagacagggggctgcatg
ggcccaacccctggagccactgtctacagcagcagtgctggcatcactgcagacaggccc
aaggagcaagtggtgctgaccagtggcgacggcatcgccttgccccagaaggtgctgttc
ccggctgagcggctcagcctgaagtggaaccaggtcaaccgcatcggatcaggtctccag
aacctgggcaacacctgcttcctcaactcggctctgcagtgtctcacctacactgctccc
ctcagcaactacatgctgtcccgggagcactctaaaacatgtcacgagcctggattctgt
atgatgtgcaccatgcagaatcatatcacccaggtctttgccaactctgggaacgtcatc
aagcccatcggagtcctcaatgagctcaaacggattgcaaagcacttccgttttggtagc
caagaggacgcccatgagttcctgcggtacacagtggatgctatgcaaaagtcctgcctg
cctggaagcaaattggacaggcaaacgcaggcaaccagtttcatccatcaagtctttgga
gggtatctaaggtccagagtaaaatgtttaaactgcaaagcagtctctgacacgtttgac
ccttatttggatgtcgctttggaaataaagactgctcccagtatcaccaaagcactggag
cagtttgttaagcctgagcagctagatggagagaatgcctacaaatgcactaagtgtaag
aagatggttccagcctctaagagattcaccatccaccgcagctccaatgtgctcaccatc
tcactgaagcgcttcgccaactacaacgggggcaagatcgctaaggacgtgaggtatcct
gagtgcctggacctgcgtcccttcatgtctcagtcccacggggagccccaggtctatgtg
ctctacgcggtcctggtgcactctggcttcagctgccacgctggacactactactgctac
gtcaaggctagcaacggccagtggcaccagatgaatgattcctctgtatcagtcagtgac
atcagatcagtcctcaaccagcaggcgtacgtcctcttctatatcaggtcacctgatctg
aagaatggaggggactacaaccacatgagtcggccccccgggcagtcgtccccccgcccc
atcctcacaccccgggtcaacatcgggccacgacacaccaacactggcttcataggacca
cagctgcccccacacatggccaagaacacctttcacatcaatgggaacggctccctaagg
gacttcccctctggctctaagcccagcaccagcagtggcggcagcagcatgggcaagact
agctacggcctgctctcctcctcttcctcttcttcctcctcctcttcctctcattctcta
agccgtcctacaggcatccctgacactgccaagcgccagaagctctccttcttcatcggt
cagggcaaacagatccgcccctcctcaacatcctcctcctcttacgcccagccgtcctcc
tgttcttcgtcacagactacctcagacatgtccgcgccccgggctccttgcataaacggt
acgccctccgttaacggaaacggtcatggagcctcattcctggtgccatatggccaggag
tcatcggaggagtctgaccaggagggaggcagcggtctggagaacggcacgaccaagcct
cacgttaacgggaggaagggaggggccgtttacggccccgtccccagagtgttggccctt
aagcccaacggcatcagtaacggccaggccaccatgcaccataacgggtccggggccaac
gggactaacggcttctccaaactcagccagatcggacatcagaacggacaccacaaagtt
aatggcatcaaacaaccggagaaggtcaacggtcatgtactgtctcctgggttgggtccc
agcatttctaatggggcagagtctcaccacagtgacccaagcaaagaggtgtatagcgcc
acacccagccaggacagcccgtctcagagcctccacagtgccgacagcgacagccacctc
tcctcaaccccagagaaaaggactaaaactcactctgaccccctccctcaccacgcacca
tcaaccactgctaacccgccatcctcattggccgatgttggtgctaagccacctactgac
gccatgagggaatccagctccacctccaaccctggggccttacccctccagcccaccccc
cactcccttagaaccctagtctctccagccttctcccagcccctctctgggacaggcctc
ggagcaccacacagcagatctggggaggacgtcagggagactgagaacagcccagcagca
gggctggatggacggctggacggcaagcccagctccagagagggaagagaccggatgtat
tcttctgatcgtgataagggcagagaccgactatattcttcggaccgcgatagggatgga
gaccggctgtactcttctgaccgggatagagacggagaaaggagtaggtaccaccgtgac
atgagccgtgaacgcaactgggaccgtgactcagaccgttatcgacaccggcgggaccac
agagatcgagaacaccaccgagaccgagaacaccaccggtcgtaccgtgatcgctcggcc
agccgggacagacacagggagtcagagcgtcgctgggagaggaacgcctaccaccccagg
gaccgctgccaccaccactaccacagacccagagagaacagggagagggacaggagggag
cacagcctcccccacagagaggagcctcacggacgctccaggtggaggggggagaggggt
gaaggtaagaggggttacaacccttcacaggaggagacccccctgcccatcccactaagc
tccaacaccaaacccagtcagccctccactagcccagacctcgccccagccagaccagcc
ctggagaaacgacccgatcctctgagagaggacagctttgaggagcgtcgggccaagaaa
cacaagaagagcaagaagaagaagtccaaggacaaagctaggcgtccagagaatgggacc
tctgacgtggattcctctgacagggctgccgatggcagcaggtcctccaaacacaagaag
aagaagaagaagaagaagaagaggaggaggcacgacactgacacggaggatgagaagtcc
cgatctacccagagttccgaggggcaccgtgaccccaacgccccccgggagggtcgcagg
gcgagcagcagtgacgaggagagggcgagcaggaagcgacgttaccaggacgatgatggc
tctgacaacagttaccctgagaaacaccatcgctccgatgacgatgacaaagaccgcttc
ttctctcgcaatatatcgccaacagcaacctctcacaacgcatcgcaccaccacctcaac
gggcacacaggtaatggcttcagtcgacccaatggaaactcccacggatgttctaccaat
gaatga
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integrated database retrieval system
