Salmo salar (Atlantic salmon): 106589736
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Entry
106589736 CDS
T04363
Symbol
msh6
Name
(RefSeq) mutS homolog 6
KO
K08737
DNA mismatch repair protein MSH6
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
106589736 (msh6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106589736 (msh6)
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
106589736 (msh6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
106589736
NCBI-ProteinID:
XP_014035491
UniProt:
A0A1S3Q6C7
LinkDB
All DBs
Position
ssa28:22560739..22597514
Genome browser
AA seq
1386 aa
AA seq
DB search
MAKQSSIFNFFNKSPPPVPKAKPSPSPAEADLPSSVRKKNSSPKEEAKHASQTPTTKKTP
TKPLNAKASKGGFGKLFGNKTLTIQESPAPCPFSAGALVWAKLEGHPWWPCMVVPQPVSG
QQMRGRGKSQRLHVHFFDEPPTRGWVSTKYIREYQGSDSSDAKTGGVFFSGKPVIRRAME
LADAAMPDSPETRLKMPVCMDPSDAEEDEEEDMELDKSTLTDEDLTEEEDEETVKSKPSR
RSSRATAEQGGKSKRRRIVVASDSEGSGDEFKPEQAGCSSEEDEEEVVNSASEEDVESER
EAEPDSPVKPVKRKRPAEKPSSAKPKPKTPTLPETAKRAPLSSTITANTKSRLSAFSAPE
SFDSQANGSGACGQGGATVWDHEKLDWLQEGRRKDAKRRRQSEEDYDPTTLYVPEDFLNK
TTPGMRRWWQLKSETFDAVLFFKVGKFYELYHMDAVIGVNELGLTFMKGSWAHSGFPEIG
FGRFSDGLVQRGYKVARVEQTETPDMMEARCKTMLKPTKFDRVVQREVCRIITRGTQTYS
VLDGAPSETHSKYLLSIKEKAEEESSGRCRTYGVSFVDTSVGYFHVGQFQDDRHCSRLRT
LLSHYVPAQVLFEKGNPSAETRKIFKASLSSAMQEGLTAGSQFWDAQKTLKTLAEEDYFK
ESVGKDEEPGSSVLPSVLKSMTSKSDSLGLTPKEGYELALSALGGCMFYLKKCLVDQELL
SMTNFQEYVPVDVEMEKAAGPTSFFSQTRQRMVLDGVTLANLEILQNVSGGTEGTLLERL
DTCSTPFGKRLLKQWLCSPLCNPTSIGERLDALEDLMGVQAQATEVSDLLKKLPDLERLL
SKIHSIGTPKGQDHPDSRAVLYEEVTYSKKKIADFLSALEGFKTMQEIVTILGPVAGDFQ
SRLLRQVVNLKDDGQEGLFPDLSAELKRWDTAFDHQKARATGVITPKAGFDPEFDQALSG
IKACERDLQDYLDRQKKRLGCRNLTYWGTGRNRFQMEVPDSVSERNIPEEYKVKSTKKGW
KRYWTREIERLFSELQSFEEKRDAALKDCMRRLFYNFDKNYRDWQTGVECMAVLDVLLSL
TRYSQGGDGGPMARPQVLLPGDISQSAAFLDLRGSRHPCVTKTFFGDDFIPNDIAIGCPG
SEEGGQEDNGHAPCVLVTGPNMGGKSTLMRQCGLVVVLAQLGCYVPAESLSFTPVDRVFT
RLGASDRIMAGESTFFVELSETASILHHGTKHSLVLLDELGRGTATYDGTAIASAVVNEL
AERICCRTLFSTHYHSLVEDYTNNPAVRLGHMACMVENEGDEDPSQETITFLYKFITGAC
PKSYGFNAARLANLPEDVIQSGHRKAKEFERSTISLRVFKKLCLYAEDPTAASTQFALLV
RMISNL
NT seq
4161 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcaaagcagcattttcaattttttcaataagtctccgccaccggttccgaag
gcgaaaccgagtccctcgcccgcagaagccgacttgccatcctcagttcgaaaaaagaac
agctctccaaaagaagaagctaagcatgcatctcaaactcccaccaccaaaaaaactcct
acaaaaccccttaatgcaaaagcgagcaaaggcggattcggcaaactctttgggaataag
acactaacaatacaggagagtccagcaccatgtccattcagcgccggagccttggtgtgg
gccaagctagaggggcacccctggtggccgtgtatggtagtgccccagcctgtcagcggg
cagcagatgaggggcaggggtaaaagccagcgcctgcatgtccacttcttcgacgagcca
ccgaccaggggctgggtcagcaccaaatatatccgcgagtatcaaggctcggacagcagt
gatgctaagacaggaggggtgttcttcagtggtaagcctgtgatacgcagggccatggag
ctggctgatgctgctatgccagacagcccagagaccagactgaagatgcctgtctgtatg
gacccatctgatgctgaggaagacgaggaggaggatatggagcttgataagtcaacattg
accgacgaagatttgactgaagaggaagatgaggagacagtgaagtcaaagcctagtcgc
cgttcctcccgtgccacagcagaacagggcggcaagtctaagcgtcgccgcatcgtggtc
gcctccgacagtgaaggctcgggtgacgaattcaaaccagaacaggccggatgcagcagt
gaggaagatgaggaagaggtagtgaacagtgcgtcggaggaagatgtagaaagtgaacgt
gaggctgaacctgacagcccagttaaaccggtgaaacgcaaacgacccgcggagaagcca
tccagtgccaaaccaaaacccaagactcccactcttccagaaaccgccaagagagccccc
ttatctagcaccatcacagccaacaccaagtctcgactctcagccttttcggccccggag
agcttcgacagccaggcgaatggctccggtgcctgcgggcaaggtggggctacggtatgg
gaccatgagaagcttgattggctacaggaaggccggaggaaagacgccaagagacggaga
cagtctgaggaagactacgaccccacgactctgtatgtcccagaagacttcttgaacaaa
acgaccccaggcatgcggcgctggtggcagctcaagtcggagacgtttgatgccgtgctc
ttcttcaaggtgggtaagttctatgagctgtaccacatggatgctgtgattggtgtcaac
gagctgggtctgaccttcatgaaggggtcctgggcccactctggctttcccgagataggc
tttggacgcttctcagacggactggtgcagaggggatacaaggtggcacgtgtggagcag
acggagactccagacatgatggaggctcgctgtaagaccatgctgaagcccaccaagttt
gaccgggtggtacagcgtgaggtgtgccgaatcatcacacggggaacgcagacctacagc
gtgttggacggagccccttctgagacacacagcaaatacctcctcagcatcaaggagaag
gcagaggaggagagttcagggcgctgcaggacctatggggtcagctttgtggacacatct
gtagggtacttccatgtgggccaattccaggacgaccgacactgctcccggctccgcacc
ctgttgtctcactacgttcctgcacaggtgctctttgagaaggggaacccttcagccgaa
acccgtaaaatcttcaaggcttctttgtcctcggctatgcaggaggggctgactgcaggc
tcccagttctgggatgcacagaagaccctgaagaccctagctgaagaagactactttaag
gagagtgtggggaaggatgaggagcctgggagcagtgttctcccctctgtcctcaaatct
atgacatctaagagcgactcgttgggtctgacccctaaggaggggtatgagttggccctg
tcggccctgggaggctgtatgttctaccttaagaaatgtctggtagaccaggagctgctg
tccatgaccaacttccaggaatatgtcccagtggacgtggagatggagaaggcagccggg
ccaaccagtttcttctcccagacccgtcagcgtatggtcctggatggggtgaccctagcc
aacctggagatcctgcagaatgtctcggggggtacagaggggaccttgttggaacgcctg
gatacctgtagtactccatttggtaaaaggttgctgaagcagtggctctgttccccgctc
tgtaaccccacatccataggggaacgcctggatgccctggaggacctgatgggagtgcag
gcccaggctacggaggtctcagacctgctcaagaagctccctgatctggagaggctcctt
agtaagatccacagcattggtactccgaagggtcaggaccacccagacagcagggctgtt
ttgtatgaagaggtcacctacagtaagaaaaagattgcggacttcctctcggctctggag
ggcttcaagaccatgcaggagattgtgaccatactaggaccggtcgcgggcgacttccag
tccaggctgctgcgccaggtggtcaacctgaaggatgacggtcaggagggcctcttccct
gacctgtcggccgagctgaaacgctgggacacagccttcgaccaccagaaggcccgcgcc
accggagtcatcacccctaaggctggctttgacccagagtttgaccaggctctcagtggc
atcaaggcctgtgagagggacctacaggactacctggacaggcagaagaagaggctgggc
tgcaggaacctgacctactgggggacgggacggaaccgctttcagatggaagtaccagac
agtgtctcagagaggaacattcctgaggagtacaaggtgaagtccactaagaagggttgg
aaacgctactggaccagggagatagagcgtctgttctcagagctccagagttttgaggag
aagagagacgcagctctgaaggactgcatgagaagactcttctacaactttgacaagaac
tacagggactggcagactggggtagagtgcatggctgtgctagatgtgttactgagtctg
acacggtacagccaggggggagatggaggaccaatggcacggcctcaagtactacttcct
ggtgacatcagccaatcagcagccttcctggacctgaggggctcccgccacccctgtgtc
accaaaaccttcttcggtgatgacttcatccctaatgacattgctattggctgccctggc
agcgaggaggggggccaggaggataacggacatgcaccctgcgtgctggtcactgggcct
aacatgggaggaaagtcgactcttatgagacagtgtggtctggtggtggtcttggcccag
ttgggttgctatgttcctgctgagagcctgtcctttacccctgtggacagagtcttcacc
cgcttgggagcatcggaccgtatcatggctggggagagcaccttctttgtagagctcagt
gagactgctagtatcctccaccatgggaccaagcactccctggtgctgctggatgaactg
gggaggggcacagccacatatgacggcacagcgatagccagtgctgtggtgaacgagctg
gcggaaaggatctgctgtcggaccctcttctccacacattaccactccctagtagaagac
tacaccaacaaccctgctgtacggctcggacacatggcctgtatggtggagaatgaggga
gatgaggaccctagtcaggagaccatcaccttcctctacaagtttataacgggagcatgt
cctaaaagctacggtttcaatgctgctcgcctcgccaacctgcctgaggatgttatacaa
tcaggccacaggaaggccaaggagtttgagaggagcaccatttccctacgagtcttcaag
aagctgtgtttgtatgctgaagaccccacagcagccagcacacagtttgccttgctggtc
cggatgatcagcaacctgtga
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integrated database retrieval system
