KEGG   Salmo salar (Atlantic salmon): 106590370
Entry
106590370         CDS       T04363                                 
Symbol
wdr48
Name
(RefSeq) WD repeat domain 48
  KO
K15361  WD repeat-containing protein 48
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    106590370 (wdr48)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sasa03400]
    106590370 (wdr48)
DNA repair and recombination proteins [BR:sasa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     106590370 (wdr48)
SSDB
Motif
Pfam: DUF3337 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML WDR55 Beta-prop_EML_2 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_SPT8 NBCH_WD40 Beta-prop_DCAF12 Beta-prop_SCAP Beta-prop_EIPR1 ANAPC4_WD40 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_DCAF4 WD_LRWD1 WD40_RFWD3 WDR54 Beta-prop_Vps41 RAWUL Nucleoporin_N Tfb2_C
Other DBs
NCBI-GeneID: 106590370
NCBI-ProteinID: XP_014036804
UniProt: A0A1S3QBL0
LinkDB
Position
ssa29:22612487..22622209
AA seq 683 aa
MATLHRQNAAGRRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVN
QHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYV
KALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQMG
TVIVSGSTEKSECVLLQVLRVWDPRTCAKLMKLKGHTDNVKSLLLNRDGTQCLSGSSDGT
IRLWSLGQQRCIATYRVHDEGVWALQVNEAFTHVYSGGRDRKIYCTDLRNPDLRVLICEE
KAPVLKMELDRSADPPTALWVSTTKSTVNKWSLKGIHNFRASGDYDNDCTAPLTPLCTQP
EQVVTGGASIIQCHILNDKRHILTKDTNNNIAYWDVLKACKGEDLGKMEFDEEIKKRFKM
VYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEY
WPRTHINPMDEETEMNHMNGEHESRIQKGNGYFHVPPHTPVIFGEAGGRTLFRLLCRDSG
GETESMLLNETVPQWVIDITVDKNMPKFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVR
KVMEHVYEKIINLDNESQTGASGNNDKPSEQKEEEDVAVLAEEKIELLCQDQVLDPNMDL
RTVKHFIWKSGGDLTLHYRQKST
NT seq 2052 nt   +upstreamnt  +downstreamnt
atggcgactcttcacaggcaaaatgctgctgggcggagaaaagtccaggtatcctatgtg
attagggatgaggtggagaagtataaccgcaatggggtgaacgccctgcagctcgacccg
gccttgaaccgcctcttcacggctggccgagactccatcattaggatatggagcgtcaac
cagcacaagcaggacccgtacattgcgtcgatggaacaccacacagattgggtcaatgac
atcgtcctctgttgcaatgggaagacattgatatctgcttcctcagacaccacagtgaaa
gtctggaatgcgcataagggattctgcatgtccacattgcgaacacataaggactatgtc
aaagcattagcctatgccaaggacaaggaactggtggcctcagcagggctggacagacag
atctttctatgggacgtcaacacactaacggcactgaccgcatccaataatactgtcacc
acctcctcactgagtgggaacaaagactccatctacagtctggctatgaatcagatgggc
accgtcattgtgtcagggtccactgaaaagagtgaatgtgtcctgctacaggtgctgaga
gtttgggatcctcgaacctgtgccaagctgatgaagttgaaaggccacacagacaacgtt
aaatcattactgctaaacagggatggcactcagtgtctctcgggcagctcagacgggacc
atccgtctgtggtcgctggggcagcagcggtgcatcgctacctaccgggtgcacgatgag
ggcgtgtgggccctgcaggtcaacgaagccttcacgcatgtctactccggcggacgtgac
cgcaagatctactgcaccgacctgaggaatccagacctccgcgttctcatctgcgaggag
aaagccccagtcctcaagatggagctggaccgctcggcagacccccccacagccctctgg
gtctccaccaccaagtccaccgtcaacaaatggtctctgaagggcattcataatttccga
gcatctggcgattacgacaacgactgcactgctcccctgacgcctctctgtactcaaccc
gagcaggtcgttacagggggagccagtattatccagtgtcacattctgaacgacaagaga
cacatactaaccaaagacaccaacaacaacattgcatactgggatgttttaaaggcgtgt
aaaggggaagacctgggaaagatggagtttgacgaagagattaaaaagaggttcaaaatg
gtctatgtgccaaactggttctcagtggatcttaaaactgggatgttgaccatcacgctg
gatgagagcgactgctttgctgcatgggtgtcagccaaggatgcaggcttctccagtcct
gatgggtctgaccccaagttgaacctgggcggactgctgctgcaggccttactggagtat
tggccccgaacccacatcaaccccatggatgaagagacagagatgaaccacatgaacggg
gagcatgagagcaggatacagaaaggtaacggctacttccatgttccccctcacacacca
gtcatctttggagaggcagggggaaggaccttgttcaggttgttgtgtcgagactccggt
ggtgagactgagtccatgttgctcaacgagaccgtgccacagtgggtcatcgacatcacc
gtggataaaaacatgcccaaattcaacaaaatccccttctacctccagcctcattcttct
tctggtgcaaaaaccttaaagaaggaccgcctgtcggccagtgacatgctccaggtgagg
aaggtgatggagcacgtatacgagaagatcatcaacctggacaacgagtctcagacgggg
gcctcggggaacaacgacaagcccagtgagcagaaggaggaggaggacgtggccgtgctg
gccgaggagaagattgagctgctctgtcaggaccaggtattggatcccaatatggacctg
cggaccgtcaagcattttatctggaagagcggtggagacctaacccttcactaccggcag
aagtccacgtga

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