Salmo salar (Atlantic salmon): 106592012
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Entry
106592012 CDS
T04363
Symbol
ciita
Name
(RefSeq) class II major histocompatibility complex transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
sasa
Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sasa01001
]
106592012 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
sasa04054
]
106592012 (ciita)
Enzymes [BR:
sasa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
106592012 (ciita)
Protein kinases [BR:
sasa01001
]
Serine/threonine kinases: Other
TAF1 family
106592012 (ciita)
Pattern recognition receptors [BR:
sasa04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
106592012 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
LRR_6
LRR_14
LRR_4
AAA_16
nSTAND3
RsgA_GTPase
VapE-like_dom
DUF815
ABC_tran
AAA_22
Motif
Other DBs
NCBI-GeneID:
106592012
NCBI-ProteinID:
XP_014038785
UniProt:
A0A1S3QFK4
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Position
Un
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AA seq
861 aa
AA seq
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MCQDMEAGLSLASHYVDVRLVQRQIQIGSGKNGSKCLEKDLVAIGDGERRRDSLARSQVF
ESSAGAKPKRSVVLLGNAGMGKSTLIKKLCVDWSDGLLPQFDFVFLLDGKALTLPPEPTY
SLQSLLLHYSSSSSPIPSTCPHHRDVFNQVLSVPERVLVIFDGFEVVRDLEGLLQCPADD
SKGETYSVRQLFSGLLQRKLLPGCSLLLSARPRGTVSGLLRRADSLLELSGFSPPDVERY
LGQYFSGQSQEVPTSGLTSDPIPVPVPTSDPASDPIPVPVPTSDPASDPIPVPAPVPVPA
PVPPRGRRRPQGECLDLAQRFAVGLLFRNKAELRDLATLDTGAMKVVMAKRAAVISHLEN
LHHGDLSPARLLEACHCVYETGDVHLVRHLVRNLPEVLSFQGVPLCPADTFVVWNLLDQC
RTLRRRFCLGLEDTGLRMTGLKLLTGLNNIHSYRYWYCYTDRPDTPRGRRRPQGECLDLA
QRFAVGLLFRNKAELRDLATLDTGAMKVVMAKRAAVISHLENLHHGDLSPARLLEACHCV
YETGDVHLVRHLVRNLPEVLSFQGVPLCPADTFVVWNLLDQCRTLRRRFCLGLEDTGLRM
TGLKLLTGLNNIHSYRACIADTITLWEELEQSGEEELLKAAVSKLTLNPFRATQVSHVKH
LSTLVNIHTSRRLSESLSDGVLGEGIPAVRDLHKLEFELGPVNGPLALPKLLELLPALHS
LHHLDLENSKLGDSGAQGLAEAVVSLSSLQIINLSQNCIGDQGIGSLAPALSTLSSLHCL
SLYSNVISDGGAESLAAVLPQMTSLSDLDVKYNSFTALGAQSLSSSLRDCPWIKSLGMWN
VCIPYGVLERLQQQDPRIQLL
NT seq
2586 nt
NT seq
+upstream
nt +downstream
nt
atgtgccaggacatggaggcgggccttagcctggcgtcccactatgttgacgtgcgattg
gtccagaggcagatccagattggctcagggaagaacggcagcaagtgtctggagaaggat
ctggtcgctatcggagacggggagaggaggcgggactcgttggccaggagtcaggtgttc
gagagctccgccggggcgaaacccaaacgttccgtcgtgttgctaggcaacgccggcatg
ggcaaaagcacgctcatcaagaagctctgcgttgattggtccgacggcctactgcctcag
tttgactttgtgttcttattggacggtaaggctctgaccctcccccccgagccgacctat
agccttcagtccctcctcctacactactcctcctcctcctcccccattccctctacctgt
ccccaccaccgggatgtcttcaatcaggtcctctctgtcccggagcgtgtgcttgtgata
ttcgacggcttcgaggtggtgcgtgacttggaggggctgctgcagtgtccagcggatgac
agtaaaggggagacctacagcgttagacagctgttctcaggcctgctccagaggaagctc
ctaccaggctgctctctgctcctctctgcccgaccacgaggcaccgtcagtgggctgctg
agacgggctgacagcctcctggaactctctggcttctccccaccggacgtagagagatac
ctgggacaatacttctctggacagtcccaagaggtcccaacctcaggcctaacctcagat
ccaatcccagtcccagtcccaacctcagacccagcctcagatccaatcccagtcccagtc
ccaacctcagacccagcctcagatccaatcccagtcccagccccagtcccagtcccagcc
ccagtcccacccagggggaggcgacggcctcagggagagtgtctggaccttgctcagcga
ttcgctgtcgggctgcttttccggaacaaggcggaactccgggatctggccaccctggat
accggcgccatgaaagtggtgatggccaagcgagccgctgtgatttcacacctggagaac
cttcaccacggcgacctgagccccgctcgactcctggaggcgtgtcactgtgtttacgag
acaggcgacgtccacttggtcagacacctggtacggaaccttcctgaggttctgtcgttc
caaggggttccgctgtgccccgctgacaccttcgtagtgtggaaccttttggaccagtgt
agaaccctgaggaggaggttctgtctggggctggaggacacaggactgaggatgacagga
ttaaaactactgacaggtctcaacaacatacactcatacaggtactggtactgttacact
gatagacctgatacacccagggggaggcgacggcctcagggagagtgtctggaccttgct
cagcgattcgctgtcgggctgcttttccggaacaaggcggaactccgggatctggccacc
ctggataccggcgccatgaaagtggtgatggccaagcgagccgctgtgatttcacacctg
gagaaccttcaccacggcgacctgagccccgctcgactcctggaggcgtgtcactgtgtt
tacgagacaggcgacgtccacttggtcagacacctggtacggaaccttcctgaggttctg
tcgttccaaggggttccgctgtgccccgctgacaccttcgtagtgtggaaccttttggac
cagtgtagaaccctgaggaggaggttctgtctggggctggaggacacaggactgaggatg
acaggattaaaactactgacaggtctcaacaacatacactcatacagggcgtgtatcgct
gacaccatcactctgtgggaggagctagagcagagtggggaggaggagcttctgaaagcg
gctgtgtctaagttgacccttaaccctttcagagccacgcaggtgtcccatgtaaaacac
ctgtctacactggtcaacatacacacaagcaggagactgtctgagagcctatcagacggg
gtcctgggggagggtatacctgcagtcagagatcttcacaagctggagtttgagttgggg
ccagtgaatggccctctggctctccctaaactcctggagctgctgccagccttgcacagt
ctacatcacctggatctggagaacagtaagctgggggacagtggtgctcagggtctggct
gaagctgtggtgtctctctcctctctgcagattatcaatctgtcccagaactgtatagga
gaccagggaatagggagtctggctcctgccctgtctaccctctcctcactgcactgtctc
agtctgtacagtaatgtgatatctgacgggggtgctgagagtctggctgctgtcttacct
cagatgacatcactcagtgacctggatgtcaagtacaacagtttcacagccctgggagct
cagagtttgtcttccagtctgagggactgtccatggatcaagagtctggggatgtggaat
gtgtgtattccctacggtgtgttagagagactgcaacaacaggacccacggatacagctg
ctctag
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