Salmo salar (Atlantic salmon): 106593073
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Entry
106593073 CDS
T04363
Name
(RefSeq) partner and localizer of BRCA2-like
KO
K10897
partner and localizer of BRCA2
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03440
Homologous recombination
sasa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
106593073
03460 Fanconi anemia pathway
106593073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sasa03400
]
106593073
DNA repair and recombination proteins [BR:
sasa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
106593073
FA (Fanconi anemia) pathway
Downstream FA components
106593073
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Motif
Other DBs
NCBI-GeneID:
106593073
NCBI-ProteinID:
XP_014039891
UniProt:
A0A1S3QIR4
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Position
ssa02:65295837..65309570
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AA seq
1294 aa
AA seq
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MEDNLESVLHCDDKEELRRKLALLQREYSRTVQRLQRAERSDAVRKHVRSRISEQNLQDQ
TDPVPANTFPNPALPPLSLGSPARTAPGSALPLGPAGDSTVVASCPVESENTRRSSPSIR
FLIPVDNSCPRTPDLNPHRRSHSLRLRSRRSRLCWERTGRGEGAEGRYDTETSEDGLELD
ARTEKEEDGEKRKMGEEKEGEKKELEREENERETPDKEAMKQRDGEEREEQRTCGQKERE
KEGVNLRRDGEREEGGDSGAVGASVLGAVGLCNTGGVLDSCTLVEGLPFPVEYYIRTTRR
MASSQSHRDLQAVILNQLNRGRHRRSRGRMSNPHSLSTSHSDSLAQPSNHRQCSSQLTSN
SPTNRTPVEEPSANQMLTSESGTNQSERLPSRACSVRPIRGRRRRGRRPRLGRSLSLDSD
PPAPGPDNTQTPAAISPASQPLPGGGCPERWPLSGGVEEQFYPIFRRSCVSPLIHTPKQS
KESVWSLLLPSSLSPGGPAVHPGSLGRVISTFDLQDFHLPDDQFGQLKLQKLRASSAVAV
PEPEPFSPYNMRRRRSRGSVHGLHGDTGGLMSKAPTPEPLPLSLTPPVTDCVTPVEQSID
RSIGQHLIDHPIGQQSTDALDHSTDLHSEYHSVCQSTDHLVDQPIGHQSTDHLVDQPIGH
QSTDHPVDQPIGHQLTVLVGQSIDFLSVDQQTGRLTTECPSLQTETKTECPPECPSFHTK
TKCLSTCPTKFSVECLTKCPSVCTTECPSLRTETDAECAVPPSPSLLLLSPSLTSHTPRG
QTLSLPLSSSPPLPSLGMTPNPLTPNPNIPLSLPDSSPLSSLEAVTHILSCPPCPPSLTL
PLSCPPCPPTLTLPFPSSPSTQALSPPSLSPCPSPAIPLSTSPPSLAPCHLSLVDSLPQL
LLPPTPLLLPQSLPPNPNTPPPLPPTQPLCQPAPSLHSTRQATEERGEGEEERAWRKKEE
KRDGMTEGVLMLSHTLKTPAGGSLVDVCCVSWLSVGVCVAVAGEWEVCVWGQTNPPHWRR
LHTWTFIESVMSVFPVPDAPGLLCVTLGQLEIREARVLCCSSLSQAVLCEGEVQMVVGMS
NRRLVSSSYSVATTPLQVYTLTQDGRLQGCLSLVCPTERVRTVAAVEGQTDALIGSTHGG
HVVLWNVTTGQLLQRITLGDGFTDTLCLRGYSLCGVLFVLLQHPSLCAVEEEEGGALFSL
VATNPLTGTVALATRLGLPKACTGRLVEVDVHGSSVVGVFRSGSVCVWQLGRRQGQEGVW
FPELGCQLARWGPQGTVLTAHLNGDVCLHRYRPL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atggaggataatttggagagcgtgctccattgcgatgacaaggaggagttgaggcggaaa
ctggccttgctacagagggagtactccagaacagttcagagattacagcgagctgagcgt
tcagatgccgtgcggaagcatgtgaggagccggatctctgagcagaaccttcaggaccag
acagacccagtcccagccaacacctttcccaacccagctctaccccccctctcccttggt
agccctgctaggacagccccaggttcagccttaccgctaggccccgctggagactcgact
gtggtggcatcgtgtccggtggaatctgagaacaccaggcggagtagtccgtccatccgc
ttcctcatccctgtcgataactcttgccctcggacacctgaccttaaccctcacagacga
agccactccctccggctgaggtcacggagaagccggctgtgctgggagcggacggggagg
ggcgagggggcagaggggaggtacgacacagagaccagcgaggacgggctggagctggac
gcacggacagagaaagaagaggacggagagaagagaaagatgggggaagagaaggagggt
gagaagaaagagctagagagggaggagaatgagagggaaactccagataaagaggcaatg
aaacagagagatggagaggagagagaagaacagaggacatgtggacagaaggagagagag
aaggaaggggtgaacctgaggagagatggcgagagagaagagggaggtgattcaggagct
gtgggagcctccgtgttaggggctgttgggttgtgtaacactgggggggtcctggactcg
tgcactctggtggaaggtctgccgttccctgtagaatactacatcagaacaacaagacgc
atggcctcttcacagagccacagagacctgcaggctgtcattctgaaccaactcaacagg
gggcgccacagaaggagcaggggccggatgtctaacccacactcactctcaacttcacac
tccgactcactagcacaaccctccaatcaccgccagtgctcaagtcaactgacctcaaac
tcaccgaccaatcgcacaccggtcgaggagccatcagccaatcagatgcttacctctgag
tcagggaccaatcagagtgagcgtttaccttccagagcctgcagtgttcggcctatcaga
ggtcggaggaggagaggaaggaggccgagactgggccgctctctaagtttggactcagat
cctccagcaccaggcccagacaacacccagaccccggccgctattagcccagcctcacag
cctctccctgggggtggatgtccagagcgctggcctctctctggaggtgtggaggaacag
ttttatcccatcttcagaaggagctgtgtgtctcccctcattcacacaccaaagcagagc
aaagagagtgtgtggtctctcctcctgccctcctccctctcccctggaggaccagcagtg
caccctgggagtctgggccgcgtcatctcaacctttgacctccaggatttccatctcccc
gacgaccagttcggacagctaaagctccagaagcttcgcgcctcgtctgccgtcgccgtc
ccagaaccggaacccttctcaccttacaacatgcgtcgtcgccgcagcagaggctcggtc
cacggtctccacggcgacacaggcggtctgatgtctaaagcgcctacgcctgagcccctc
cctctcagcctcacccctccagtcacagactgtgtcactccggtagaacagtctatagac
agatctataggccagcatcttatagaccacccaataggccagcagtctacagacgcacta
gaccattctacagacctccattcagagtaccattcagtttgccagtctacagaccacctt
gtagaccagcctataggccatcagtctacagaccaccttgtagaccagcctataggccat
cagtctacagaccatcctgtagaccagcctataggccatcagcttaccgttttagttggc
cagtctatagactttctttcagtagaccagcagacaggccgactcactactgagtgccct
tcccttcaaactgaaacaaagaccgagtgccctcccgagtgtccatccttccacacaaag
actaagtgcctttctacgtgtcctacgaagttctctgtcgagtgccttaccaaatgtcca
tccgtgtgcactactgagtgcccttccctccggacggagacagatgcagagtgtgctgtc
ccccccagcccctcgctgctcctccttagcccctcactaaccagccacacccctcgcgga
cagaccctctcccttcccctctcctccagtccccccttaccttccttagggatgacccct
aaccccttgacccctaaccccaacatacccctctccctccctgacagctccccattatct
tctttagaggcggtgactcacatcctctcctgccctccctgccccccctctctgaccctc
cccctctcctgccctccctgcccccccactctgaccctccccttcccctctagtccctcc
acccaagccctctctccgccctccctctctccctgcccctctccagccatccctctctcc
acctcccctccctccctcgctccctgccacctcagcctggttgattccctgccccaactt
ttgctccctcccactcctctactactgcctcaatctctccctccaaacccaaatacaccc
cctccattgccccctacccagcctctttgccagccagctccctctctccactcaaccaga
caggccacagaggagagaggagaaggggaggaggagagagcgtggaggaagaaagaagag
aagagggatgggatgacagagggtgtcttaatgctctctcacacactgaagacccctgca
ggaggcagcctggtggatgtgtgctgtgtgtcgtggctgtcagtaggtgtatgtgtagcg
gtggcaggagagtgggaggtgtgtgtttggggtcagaccaaccccccacactggagacga
ctccacacctggaccttcatagaatcagtgatgtcagtgtttcctgtgccggacgctcct
ggacttctgtgtgtgactctgggccagctggaaatcagagaggccagggtactgtgctgc
tctagtctgtcccaggcggtgctgtgtgagggggaggtccagatggtggtgggcatgtcc
aaccgaaggctggttagctcctcctactctgtagccacaaccccgctgcaggtctacaca
ctgacacaggatggcaggctgcagggctgcctgtctttggtctgtcctactgagcgcgtg
cggaccgtggcggcggtggagggacagactgacgctctgattggctcaacccacggcgga
catgttgttctgtggaacgtgacgacggggcagctgctgcagcgcatcactctgggagat
ggtttcacggatacgctctgcctccgaggatactccctctgcggggtgctgtttgtcctg
ttgcaacacccgtccctgtgtgctgtggaggaggaagagggaggggctctgttctcgctg
gtcgccaccaaccctctgactggcaccgtcgccctggcaaccagactaggcctccccaaa
gcctgcaccgggaggctggtggaggttgatgtccatggctccagtgttgttggggttttc
cggtctggctccgtgtgtgtgtggcagcttgggaggcgtcagggccaggagggggtctgg
ttcccagagctggggtgtcagctcgcccgttgggggccgcagggaactgtcctgacggca
cacctcaatggagacgtctgcttacaccgctacagaccactctga
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