Salmo salar (Atlantic salmon): 106593394
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Entry
106593394 CDS
T04363
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
sasa
Salmo salar (Atlantic salmon)
Pathway
sasa03015
mRNA surveillance pathway
sasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sasa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
106593394
09123 Folding, sorting and degradation
03018 RNA degradation
106593394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sasa03019
]
106593394
03041 Spliceosome [BR:
sasa03041
]
106593394
Messenger RNA biogenesis [BR:
sasa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
106593394
mRNA cycle factors
Stress granule specific factors
106593394
Spliceosome [BR:
sasa03041
]
Complex C
Other components
Complex C specific factors
106593394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RBD_RDR6
RRM_occluded
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
106593394
NCBI-ProteinID:
XP_014040204
UniProt:
A0ABM3EAL6
LinkDB
All DBs
Position
Unknown
AA seq
630 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDITEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLRELFGKYGPALSIRVMTDDGGKSRGFGFVSFER
HEDAQRAVDEMNGKDFNGRQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQTQNRA
AYYSTNQLAQLRPGPRWATQGVRPQHFQNMPNAMRPSAPRPQTFGAMRPSSSQVPRMMAG
QRMATQALGQRPTGAAAAAAPVRMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQGQEP
LTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLR
SKVDEAVAVLQAHQAKESAQKPTNPAGVPS
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaagcgcaccgagttacccgatggcttccctgtacgtcggcgacctgcaccag
gacatcaccgaggccatgctgtacgagaagttcagccccgccgggcctatcctctccatt
cgggtctgcagggacatgatcacacgtcgatctctaggatatgcctacgttaatttccaa
caaccagccgatgctgaacgtgccctggacaccatgaacttcgacgtcatcaaagggaga
cctctgcgtatcatgtggtctcagcgtgacccttccctgaggaagagcggagtgggcaac
attttcatcaagaacttggacaagtctattgacaacaaggccctctacgacaccttctca
gctttcggaaacatcctatcgtgcaaggtggtttgtgatgagaatggctcaaaggggtat
ggctttgtgcactttgagacccaggaagctgctgaaagagccattgagaaaatgaacggc
atgctgctcaatgacagaaaagtgttcgtcggacgcttcaaatcccgcaaagaacgtgag
gctgagcttggagccagagccagagagttcaccaatgtgtacatcaagaactttggcgag
gatatggatgatgagaagctgagggagctgtttgggaaatatggaccggccctgagcatc
agggtgatgacggacgacggcgggaagtccagagggttcggcttcgtcagctttgagagg
cacgaggatgctcagagggctgtagatgagatgaacgggaaggattttaacggccgtcag
gtctacgttggccgcgcccagaagaaaggagagcgccagacggagttaaaacgcaaattc
gaacagatgaaacaggatcgtatgacccggtaccaaggggtcaacctgtacgtcaagaat
ctggacgatggcctcgacgatgagcgtctgaggaaggagttctctcccttcggtaccatc
accagcgccaaggtgatgatggagggcggtcgcagcaaggggttcggcttcgtgtgcttc
tcctcgccggaggaggccaccaaggccgtgacggagatgaacggccgtatcgtggccacc
aagccgctgtacgtggcgctggctcagaggaaagaggagcggcaggctcacctcaccaac
cagtacatgcagaggatggccaccgtccggcccgtacccaacccagtcctcaacccttac
cagcctgcccctccctctggttacttcatggccgccatcccacagactcagaaccgcgct
gcctactactccaccaatcagctggctcagctgagaccaggcccacgctgggccacccag
ggtgtccgaccacaacacttccagaacatgcccaatgccatgcgtccgtccgcccccagg
ccgcagacctttggtgccatgaggccctcgtcctcccaggtgccccggatgatggccggc
cagagaatggccacccaggccctgggccagcgtcctaccggagcggcggctgctgcagcc
ccagtgaggatgccccagtacaagtacgcagcaggtgtgaggaacccccagcagcacatg
gctagccagccccaggtgcccatgcagcagcctgctgtccatgtccagggacaggagcct
ctgacggcctccatgctggcagctgctcctcctcaggaacagaagcaaatgttgggtgag
cgtctattccccctcatccagaacatgcaccccagcctggctggaaagatcactggcatg
ctgttggagatagataactctgagctgctccacatgctggagtctcccgagtctctccgc
tccaaggtggatgaagctgttgccgtgctgcaggctcaccaggccaaggagtccgcccag
aagcccaccaaccctgctggagtccccagctaa
DBGET
integrated database retrieval system
